Non-Coding RNA Search

Ss1.1-Ova1-OVRM10009H06.5

Sequence:


               
               TTGCATATGCTCAGTCAAATTAAATTATTTATTTGGGTTGGTTAGCAACTTTCTGAAACA
CAAGAGTAGAATTTAAAGCAGGTCCAGGAGTTCCCGTCATGGCTCAGCAGTTCATGAACC
CGACTAGGATCCATGAGGATGTGGGTTCGATCCCTGGCCTCGCTCAGTGGGTTAAGTATC
CAGCATTGCTGTGAGCTGTGGTGTAGGTCGCAGACATGGCTCGGATCCTGTGTTGCTGTG
GCTGTGGTGTAGGCCAGCAACAGTAGCTCCCATCCAACCCCTAGCCTGGGAATCTCCATA
TGCTGCAGGTGTGGCCCTAAAATAGCAAAAAATAAAATGAAATTTAAAAAAAAAAAATCA
GGTCCAGCTCTGGAAAATGGACATTTCACATCCCTTCTCTCTGTAGCTTAGACTCTGGAA
CCCACTCCCAGCCTTGTTCCCTATCCCCAAATAATGCTCCTCCTGACCTGGCACAACCTA
AGAGCAGAGGAAAGGTGGAGGTCTGGAGGTCCCGCCGCGGCTCAGTGGAAACGAATCTGA
CTAGGATCCACGAGGACGCAGGTTCGATCACTGGCCTCGCTCAGTGGGTTAAGGATCTGG
TGTTGGTCTGAGCTTGAGCTGTGGTGTAGGTCGCAGTCGCAGCTTGGATCTGGTGTTGCT
ATGGCTGTGTTGTAGGCTGGCAGCTGTAGCTCCGATGTGACCCCTCCATATGCCACAGGT
GCGGCCCTAAAAAGACAAAAAAATAAAAATAAATAAGAAAGGTGGAGGTCCACCCTCTCT
ACTCCATAGACTGTTCAGGCTGGCACTTGACACTGCTCCCCACACATCAGCTCATCACCA
CTCTGTGAGGGAAGCATATCCATTTCTGTTTCCAAGAGAAAAACAACTGAGGTGTAGGCA
GCAGAAGTCACTTGCCCAAGGCCAGGTGGCTGGTCAGCCGCCGAGGGGAGACTCTACCCA
TGCCCACCCAGGCGCCGCTGCCCCAGGACCACGCCTCCCTCAAGAAGCTGCTGCACTGAT
TGAAACCCTATTTCTACAGAATTCCAAGGTGCCATTTCACAGCTCTAGTCTTCACCATGT
AATAACATGTTCTTCCTATAGACTTTAATTCTTTGTTGGGCTCACAAACACTACAGACCT
TAGCTAATTCTCACAACATGCATTCCTCCACTAAGAGAAGGGGCAAGGCCACGCTGTTAG
TCCCACTTTTACGGAGAGGCGGCAGAGCCAGGGAGAGCCAGGGAGAGGATGCTGCGGCTG
GAGAATGAGAAAAAAACATAATGGCTCCCGCCCCCAGGATGGTGCTGTTGAAAGCTGCCA
GGCGGCAGGGTAGCGCGCCTCCCAGCTTGCAAGTAAGCACGAGAGAGAACATGTTTATAA
AGTTCCCGCGGTGTTTGTGACACGCCTTTTACCGTGGTTATCCAAGGGGAAAAAAAAAAA
ACCTCTTTCGGGAATGTAGTACATGAACAGAGAACCGAATCGAAACTAATTTTTAAAGCC
CTAACCAGCTCACCGAGCTCCTCCCCTGTGCTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCATATGCTCAGTCAAATTAAATTATTTATTTGGGTTGGTTAGCAACTTTCTGAAACA
CAAGAGTAGAATTTAAAGCAGGTCCAGGAGTTCCCGTCATGGCTCAGCAGTTCATGAACC
CGACTAGGATCCATGAGGATGTGGGTTCGATCCCTGGCCTCGCTCAGTGGGTTAAGTATC
CAGCATTGCTGTGAGCTGTGGTGTAGGTCGCAGACATGGCTCGGATCCTGTGTTGCTGTG
GCTGTGGTGTAGGCCAGCAACAGTAGCTCCCATCCAACCCCTAGCCTGGGAATCTCCATA
TGCTGCAGGTGTGGCCCTAAAATAGCAAAAAATAAAATGAAATTTAAAAAAAAAAAATCA
GGTCCAGCTCTGGAAAATGGACATTTCACATCCCTTCTCTCTGTAGCTTAGACTCTGGAA
CCCACTCCCAGCCTTGTTCCCTATCCCCAAATAATGCTCCTCCTGACCTGGCACAACCTA
AGAGCAGAGGAAAGGTGGAGGTCTGGAGGTCCCGCCGCGGCTCAGTGGAAACGAATCTGA
CTAGGATCCACGAGGACGCAGGTTCGATCACTGGCCTCGCTCAGTGGGTTAAGGATCTGG
TGTTGGTCTGAGCTTGAGCTGTGGTGTAGGTCGCAGTCGCAGCTTGGATCTGGTGTTGCT
ATGGCTGTGTTGTAGGCTGGCAGCTGTAGCTCCGATGTGACCCCTCCATATGCCACAGGT
GCGGCCCTAAAAAGACAAAAAAATAAAAATAAATAAGAAAGGTGGAGGTCCACCCTCTCT
ACTCCATAGACTGTTCAGGCTGGCACTTGACACTGCTCCCCACACATCAGCTCATCACCA
CTCTGTGAGGGAAGCATATCCATTTCTGTTTCCAAGAGAAAAACAACTGAGGTGTAGGCA
GCAGAAGTCACTTGCCCAAGGCCAGGTGGCTGGTCAGCCGCCGAGGGGAGACTCTACCCA
TGCCCACCCAGGCGCCGCTGCCCCAGGACCACGCCTCCCTCAAGAAGCTGCTGCACTGAT
TGAAACCCTATTTCTACAGAATTCCAAGGTGCCATTTCACAGCTCTAGTCTTCACCATGT
AATAACATGTTCTTCCTATAGACTTTAATTCTTTGTTGGGCTCACAAACACTACAGACCT
TAGCTAATTCTCACAACATGCATTCCTCCACTAAGAGAAGGGGCAAGGCCACGCTGTTAG
TCCCACTTTTACGGAGAGGCGGCAGAGCCAGGGAGAGCCAGGGAGAGGATGCTGCGGCTG
GAGAATGAGAAAAAAACATAATGGCTCCCGCCCCCAGGATGGTGCTGTTGAAAGCTGCCA
GGCGGCAGGGTAGCGCGCCTCCCAGCTTGCAAGTAAGCACGAGAGAGAACATGTTTATAA
AGTTCCCGCGGTGTTTGTGACACGCCTTTTACCGTGGTTATCCAAGGGGAAAAAAAAAAA
ACCTCTTTCGGGAATGTAGTACATGAACAGAGAACCGAATCGAAACTAATTTTTAAAGCC
CTAACCAGCTCACCGAGCTCCTCCCCTGTGCTACTT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               748-1123, gnl|bosTau2|chr5 (71209936-71210323)
               

               
               748-1123, gnl|Hg17|chr22 (40097228-40097983)
               

               
               748-1123, gnl|Mm7|chr15 (81892204-81893308)
               


               
               1126-1522, gnl|bosTau2|chr5 (71210354-71210748)
               

               
               1126-1522, gnl|Hg17|chr22 (40097986-40098351)
               

               
               1126-1522, gnl|Mm7|chr15 (81893311-81893631)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               748-1123, gnl|bosTau2|chr5 (71209936-71210323)
               

               
               748-1123, gnl|Hg17|chr22 (40097228-40097983)
               

               
               748-1123, gnl|Mm7|chr15 (81892204-81893308)
               


               
               1126-1522, gnl|bosTau2|chr5 (71210354-71210748)
               

               
               1126-1522, gnl|Hg17|chr22 (40097986-40098351)
               

               
               1126-1522, gnl|Mm7|chr15 (81893311-81893631)

	748-1123, gnl\|bosTau2\|chr5 (71209936-71210323)
	748-1123, gnl\|Hg17\|chr22 (40097228-40097983)
	748-1123, gnl\|Mm7\|chr15 (81892204-81893308)

	1126-1522, gnl\|bosTau2\|chr5 (71210354-71210748)
	1126-1522, gnl\|Hg17\|chr22 (40097986-40098351)
	1126-1522, gnl\|Mm7\|chr15 (81893311-81893631)