Non-Coding RNA Search

Ss1.1-Ova1-OVRM10011H10.5

Sequence:


               
               TAGAGCTCCGGCCGCCGCGCCGCCAGGCTTTCGTATTCCTTGTTCTCCGCGGGCTGTGGG
GGCTCCGCGCCGCGGCCGTTAGTCATGTCTGATTCTGGAAGTTACGGTCAATCTGGGGGT
GAGCAGCAAAGTTATTCTTCCTATGGAAATCAAGGCAACCAAGGTTATGGACAAGCACCA
CAAGGCTATTCTGGCTATGGGCAGACTACTGATTCTTCGTATGGGCAGAACTATGGCGGC
TACTCCAGTTACGGACAAAGCCAATCAGGTTATTCGCAGCCCTACGGTGGTTATGAGAAT
CAAAAGCAGAGCTCATATGGCCAACCATCCTATAATAACCAGGGACAGCAAAACACGGAA
TCATCAGGAGGCCAAAGTGGAAGAGTGCCTTCATATGACCAGTCAGACTATGGTCAACAA
GATTCATATAACCAGCAGTCAGGCTATGATCACCATCAAGGCTCATATGACGAGCAATCA
AATTACAATCAGCAGCATGATTCCTATAATCAAAACCAGCAGTCCTACCATTCACAAAGG
GAAAATTACAGCCACCACACACAAGATGACCGTCGTGATGTGAGTAGGTATGGAGAAGAT
AATAGAGGATATGGCGGGTCACAGGGAGGAGGTAGAGGGCGTGGGGGATATGACAAGGAT
GGAAGAGGTCCTATGACAGGATCAAGTGGTGGTGACCGCGGTGGCTTCAAAAATTTTGGT
GGTCACAGGGATTATGGACCCAGGCCAGATGCTGATTCAGAATCTGATAATTCAGATAAC
AACACAATCTTTGTGCAAGGAGCTTGGGGAGGGTGTGTCTACAGTCAAGTGGGGGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAGCTCCGGCCGCCGCGCCGCCAGGCTTTCGTATTCCTTGTTCTCCGCGGGCTGTGGG
GGCTCCGCGCCGCGGCCGTTAGTCATGTCTGATTCTGGAAGTTACGGTCAATCTGGGGGT
GAGCAGCAAAGTTATTCTTCCTATGGAAATCAAGGCAACCAAGGTTATGGACAAGCACCA
CAAGGCTATTCTGGCTATGGGCAGACTACTGATTCTTCGTATGGGCAGAACTATGGCGGC
TACTCCAGTTACGGACAAAGCCAATCAGGTTATTCGCAGCCCTACGGTGGTTATGAGAAT
CAAAAGCAGAGCTCATATGGCCAACCATCCTATAATAACCAGGGACAGCAAAACACGGAA
TCATCAGGAGGCCAAAGTGGAAGAGTGCCTTCATATGACCAGTCAGACTATGGTCAACAA
GATTCATATAACCAGCAGTCAGGCTATGATCACCATCAAGGCTCATATGACGAGCAATCA
AATTACAATCAGCAGCATGATTCCTATAATCAAAACCAGCAGTCCTACCATTCACAAAGG
GAAAATTACAGCCACCACACACAAGATGACCGTCGTGATGTGAGTAGGTATGGAGAAGAT
AATAGAGGATATGGCGGGTCACAGGGAGGAGGTAGAGGGCGTGGGGGATATGACAAGGAT
GGAAGAGGTCCTATGACAGGATCAAGTGGTGGTGACCGCGGTGGCTTCAAAAATTTTGGT
GGTCACAGGGATTATGGACCCAGGCCAGATGCTGATTCAGAATCTGATAATTCAGATAAC
AACACAATCTTTGTGCAAGGAGCTTGGGGAGGGTGTGTCTACAGTCAAGTGGGGGAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884815|ref|XP_609311.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884815|ref|XP_609311.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               371-489, + strand, RNAz p=0.985662

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-489, + strand, RNAz p=0.985662

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               371-565, gnl|bosTau2|chr19 (7938840-7938646)
               

               
               371-565, gnl|Hg17|chr17 (31173756-31173950)
               

               
               371-565, gnl|Mm7|chr11 (83557127-83557318)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               371-565, gnl|bosTau2|chr19 (7938840-7938646)
               

               
               371-565, gnl|Hg17|chr17 (31173756-31173950)
               

               
               371-565, gnl|Mm7|chr11 (83557127-83557318)

	371-565, gnl\|bosTau2\|chr19 (7938840-7938646)
	371-565, gnl\|Hg17\|chr17 (31173756-31173950)
	371-565, gnl\|Mm7\|chr11 (83557127-83557318)