Non-Coding RNA Search

Ss1.1-Ova1-OVRM10012A08.5

Sequence:


               
               TGTCATGTTGTTCTTTCCCCTATACTCTGCCAGTCACTGAGGACACAGATAATGTCTTAA
TTTCAACATCTTCCTTCACCTCAAAGAAAAGACATCTGGCTTAGATGAACACCCAGTTTT
GTTTCATGGTCACCTTGTAAACAGGCCCTCCCCTTCTTAATTCATACATTGAGAAATAGT
TCATGGACTGTGTATAAAACTCAGTATTCCTACGTCTTGCATGAAATTTGAAAAAATTAA
ATTAATTAATGAAAAAAATTAGGACTATGCATAACCACACCTGGTCCTTTAGTTTCACCA
ATTGATTCCTTGAAAAAACAAATGAATTTTGATTTACCTGTAAGTAGTTGTGTAGGTTTA
AAAAAAGAAAAAGTGTCTAAGACATAAAGTAAGAAATGTGGATTCCAACAGAATCATGGT
CTTATCTTAGTTGCATCTAATTCTGGTGCTGGCTTTTATCACCCTGAACATCTCAGGTGA
CCCAGTTTCCAGGCAGCTTAGGATTCTGCCCTGGCGCTGACAACCTTCTTGTGTTGTTTC
ACTCACCGGAGGACGTAGTAGGAGTCCAATTCTGGTACTAGAAGTCATGCCTTCCACTAG
CTTACTCCTAAGACTAGGGCACCTTCTTTGCCTGAACTTTTAACTGTATAAATGTTCACT
TTATATAGCGTCAGATAGCACCAACAGTGTGAAATAGGTATAGTCACTTATTTTGATGCC
TATTATAGGCTGACACAGGTGGATGATTCTGATATGTAGCCCTGGACTCTTTGGGCCACC
CCAAAAGAAACCCAACTCAAAACCAGTATGAGCCGTACTGGGATTTATTTCCTCCCATAT
CTGGAAAGTTGGCGGCCACAGCCAGCTCTGGATATATCTGGATGGGAGATTTAAATGATG
TCATCAGAAACTTCTCTCTTTGTCTCCACTTTCTTCTGTGTTGGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCATGTTGTTCTTTCCCCTATACTCTGCCAGTCACTGAGGACACAGATAATGTCTTAA
TTTCAACATCTTCCTTCACCTCAAAGAAAAGACATCTGGCTTAGATGAACACCCAGTTTT
GTTTCATGGTCACCTTGTAAACAGGCCCTCCCCTTCTTAATTCATACATTGAGAAATAGT
TCATGGACTGTGTATAAAACTCAGTATTCCTACGTCTTGCATGAAATTTGAAAAAATTAA
ATTAATTAATGAAAAAAATTAGGACTATGCATAACCACACCTGGTCCTTTAGTTTCACCA
ATTGATTCCTTGAAAAAACAAATGAATTTTGATTTACCTGTAAGTAGTTGTGTAGGTTTA
AAAAAAGAAAAAGTGTCTAAGACATAAAGTAAGAAATGTGGATTCCAACAGAATCATGGT
CTTATCTTAGTTGCATCTAATTCTGGTGCTGGCTTTTATCACCCTGAACATCTCAGGTGA
CCCAGTTTCCAGGCAGCTTAGGATTCTGCCCTGGCGCTGACAACCTTCTTGTGTTGTTTC
ACTCACCGGAGGACGTAGTAGGAGTCCAATTCTGGTACTAGAAGTCATGCCTTCCACTAG
CTTACTCCTAAGACTAGGGCACCTTCTTTGCCTGAACTTTTAACTGTATAAATGTTCACT
TTATATAGCGTCAGATAGCACCAACAGTGTGAAATAGGTATAGTCACTTATTTTGATGCC
TATTATAGGCTGACACAGGTGGATGATTCTGATATGTAGCCCTGGACTCTTTGGGCCACC
CCAAAAGAAACCCAACTCAAAACCAGTATGAGCCGTACTGGGATTTATTTCCTCCCATAT
CTGGAAAGTTGGCGGCCACAGCCAGCTCTGGATATATCTGGATGGGAGATTTAAATGATG
TCATCAGAAACTTCTCTCTTTGTCTCCACTTTCTTCTGTGTTGGCTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               801-918, + strand, RNAz p=0.976122

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               801-918, + strand, RNAz p=0.976122

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-238, gnl|bosTau2|chr14 (20296494-20296259)
               

               
               3-238, gnl|Hg17|chr8 (71355511-71355266)
               

               
               3-238, gnl|Mm7|chr1 (13421817-13421603)
               


               
               249-948, gnl|bosTau2|chr14 (20296276-20295585)
               

               
               249-948, gnl|Hg17|chr8 (71355283-71354638)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-238, gnl|bosTau2|chr14 (20296494-20296259)
               

               
               3-238, gnl|Hg17|chr8 (71355511-71355266)
               

               
               3-238, gnl|Mm7|chr1 (13421817-13421603)
               


               
               249-948, gnl|bosTau2|chr14 (20296276-20295585)
               

               
               249-948, gnl|Hg17|chr8 (71355283-71354638)

	3-238, gnl\|bosTau2\|chr14 (20296494-20296259)
	3-238, gnl\|Hg17\|chr8 (71355511-71355266)
	3-238, gnl\|Mm7\|chr1 (13421817-13421603)

	249-948, gnl\|bosTau2\|chr14 (20296276-20295585)
	249-948, gnl\|Hg17\|chr8 (71355283-71354638)