Non-Coding RNA Search

Ss1.1-Ova1-OVRM10012G06.5

Sequence:


               
               TTTGTTTTTTTTTGTCTTCCAGGTGAGATTTCTTTCTCCAAGTTCTCAGCTAATAGATGG
CTAGGTTGGGAGTGAGGAAATCTGGGCTCTAGGCCTGGTGATGCTCTTACGTAAGGGTCC
TTTGCATCTCACTGACCTTCTCTGACCCAACATCCTTCTGGTGTGAAATGAGGAATGAGA
CTGAAAAGACCTCTGTGTGAAATTAGCTGGTTGTTGACCACTTTCCCCACTTCTGGTTTG
TCTCTCTCAGCATTTCTGAACTTCTGAAGTAAGGAGGGCCTTGCCAGGTTGACCTACCCA
CACCCCTCCACATTTGCTGCCAAGAAGAAAGGGCCCAGGGAACAGCAGGTTACCTCTTGA
ATCTTCAGCAGACCTAAGAGGCTGCCGAGGCTGCCGGCAGAAATAACCCCCTCTACCTTT
GTTTTTTTCTTTTTGTCTGTGCCCATGGCTTGTCGAAGTTCCCAGGCCAGGGATCGAACC
TGCACCACAGCAGGGACCCAAGCGGCAGCAGTGACAATGCTGGATTCTTAGCCCACTGAG
CCAGAGGGAACTCCTCCTCTATCTTAATCAGAAATAGTTCTAGGCTTCCACAGGCTCAGC
TTAGCATTCTCTTGGCTGTTCCCCTCCTGCCTTGGCTGGCACTGTCTACATGTACTAGGC
TGGGGATATTTTTCTCGAGCCTTTACCTTGGGTCTCCTCTTTCCCTGCAATAGGAGAATG
GGGACGAGGTGCTGAGTAAAGTGATCCCAGATGTGGGCAAGGTGTTCCGGCTGGAGGTGG
TGGTGGACCAGCCCATGGAGAGGCTTTATGAAGAGCTTGTGGAGCGCATGGAGGCCATGG
GCGAGTGGAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTTTTTTTTTGTCTTCCAGGTGAGATTTCTTTCTCCAAGTTCTCAGCTAATAGATGG
CTAGGTTGGGAGTGAGGAAATCTGGGCTCTAGGCCTGGTGATGCTCTTACGTAAGGGTCC
TTTGCATCTCACTGACCTTCTCTGACCCAACATCCTTCTGGTGTGAAATGAGGAATGAGA
CTGAAAAGACCTCTGTGTGAAATTAGCTGGTTGTTGACCACTTTCCCCACTTCTGGTTTG
TCTCTCTCAGCATTTCTGAACTTCTGAAGTAAGGAGGGCCTTGCCAGGTTGACCTACCCA
CACCCCTCCACATTTGCTGCCAAGAAGAAAGGGCCCAGGGAACAGCAGGTTACCTCTTGA
ATCTTCAGCAGACCTAAGAGGCTGCCGAGGCTGCCGGCAGAAATAACCCCCTCTACCTTT
GTTTTTTTCTTTTTGTCTGTGCCCATGGCTTGTCGAAGTTCCCAGGCCAGGGATCGAACC
TGCACCACAGCAGGGACCCAAGCGGCAGCAGTGACAATGCTGGATTCTTAGCCCACTGAG
CCAGAGGGAACTCCTCCTCTATCTTAATCAGAAATAGTTCTAGGCTTCCACAGGCTCAGC
TTAGCATTCTCTTGGCTGTTCCCCTCCTGCCTTGGCTGGCACTGTCTACATGTACTAGGC
TGGGGATATTTTTCTCGAGCCTTTACCTTGGGTCTCCTCTTTCCCTGCAATAGGAGAATG
GGGACGAGGTGCTGAGTAAAGTGATCCCAGATGTGGGCAAGGTGTTCCGGCTGGAGGTGG
TGGTGGACCAGCCCATGGAGAGGCTTTATGAAGAGCTTGTGGAGCGCATGGAGGCCATGG
GCGAGTGGAACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               727-850, - strand, RNAz p=0.576454

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               727-850, - strand, RNAz p=0.576454

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               29-325, gnl|bosTau2|chr27 (21197104-21196798)
               

               
               29-325, gnl|Hg17|chr8 (38124285-38123961)
               

               
               29-325, gnl|Mm7|chr8 (24566956-24567226)
               


               
               553-850, gnl|bosTau2|chr27 (21196562-21196265)
               

               
               553-850, gnl|Hg17|chr8 (38123581-38122986)
               

               
               553-850, gnl|Mm7|chr8 (24567290-24567570)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-325, gnl|bosTau2|chr27 (21197104-21196798)
               

               
               29-325, gnl|Hg17|chr8 (38124285-38123961)
               

               
               29-325, gnl|Mm7|chr8 (24566956-24567226)
               


               
               553-850, gnl|bosTau2|chr27 (21196562-21196265)
               

               
               553-850, gnl|Hg17|chr8 (38123581-38122986)
               

               
               553-850, gnl|Mm7|chr8 (24567290-24567570)

	29-325, gnl\|bosTau2\|chr27 (21197104-21196798)
	29-325, gnl\|Hg17\|chr8 (38124285-38123961)
	29-325, gnl\|Mm7\|chr8 (24566956-24567226)

	553-850, gnl\|bosTau2\|chr27 (21196562-21196265)
	553-850, gnl\|Hg17\|chr8 (38123581-38122986)
	553-850, gnl\|Mm7\|chr8 (24567290-24567570)