Non-Coding RNA Search

Ss1.1-Ova1-OVRM10020D12.5

Sequence:


               
               AGAGTCTTAGGGGTTTCGAGGGCAGAACGGGCCCGGGTTGTGTGCTCAGCATCACCTGAA
TCTGGAGGAGTCAGAGGCAGCGCCCCACAGCGCCCCAAAATCAAAGACACTAATCCAGGT
GCAGCCGAAAGTAGGCATTTTTCCTCTCTGTGGGCTAAACAGAAACTATGAGTTGATGAA
GGTTTGGTCAGATTTTGTCTTGGAAGGAGCTACGAAAGTATTTTCAGTTTTCCAATCTTT
GGGGATTGTTAACTGCAGATAAGGGGCTGCGCATCTGTATTCTTTTAATATAGAGGCCCA
CTCTGCTGTCACCAAGGAGATGTGGCCTCACACGGAACCACTGTCCCTGATAGAGGCGCC
AGGCTCTCCCGAGGCTGGCAGGTGACTCTGTCTCCTCCGCACGTGGGCCGTCATGTGGCC
TCCATCAGGATAGGATGGGAGAAGAAGGCGGGGCTTGGCGGCCGGCTGGTGACCCCTGAA
GGAATGTGTCCTGCGCTCTTGGCAAACGGCACTGCCCCTACTGTGCTATTATCTTCGAAT
GTGATTTACTTCAGCTCTCCCAAACAGACAACTGTCTGAACGAGGCAGGGATGCGGCTAG
AACCTGAATGGTCCACACTTTACTGAAATTGAAGGGCAGCCATCATTCACCCGAGTTACT
CCTAATGAAGAAAACGTATGCAATTCGGAACGAGTAACCCGATTGCGGTAAGCTAAATAG
CACCGGGAACTATCTACCCGGCAGTTGGAGAGAACCACGGTTGCAATTTTTTCTGAGATT
TGTCAGAATAGGAATGACTCCATCCAGGGAAGGTAATGGATGTGAAAATGGGAAATGGAG
CCATAAGAACGGAAGGCTGCATTATTGCCTTTATTTCCATGCCTGTGGGTTTTACTCTGT
AATTCAAGAAGATGTTCATGGGAAAGGTGCTGTTCGGACCATTCTTCGGCCGTGGGCCAC
CTCTTAGCACATTTCCCAGGGCTGTCTTTTTTTTGCATCAGGGTGTCCTTGAATTGCACC
CCCTGGGGTGTTTGCCCGGTGCTACCGCATNCCGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTCTTAGGGGTTTCGAGGGCAGAACGGGCCCGGGTTGTGTGCTCAGCATCACCTGAA
TCTGGAGGAGTCAGAGGCAGCGCCCCACAGCGCCCCAAAATCAAAGACACTAATCCAGGT
GCAGCCGAAAGTAGGCATTTTTCCTCTCTGTGGGCTAAACAGAAACTATGAGTTGATGAA
GGTTTGGTCAGATTTTGTCTTGGAAGGAGCTACGAAAGTATTTTCAGTTTTCCAATCTTT
GGGGATTGTTAACTGCAGATAAGGGGCTGCGCATCTGTATTCTTTTAATATAGAGGCCCA
CTCTGCTGTCACCAAGGAGATGTGGCCTCACACGGAACCACTGTCCCTGATAGAGGCGCC
AGGCTCTCCCGAGGCTGGCAGGTGACTCTGTCTCCTCCGCACGTGGGCCGTCATGTGGCC
TCCATCAGGATAGGATGGGAGAAGAAGGCGGGGCTTGGCGGCCGGCTGGTGACCCCTGAA
GGAATGTGTCCTGCGCTCTTGGCAAACGGCACTGCCCCTACTGTGCTATTATCTTCGAAT
GTGATTTACTTCAGCTCTCCCAAACAGACAACTGTCTGAACGAGGCAGGGATGCGGCTAG
AACCTGAATGGTCCACACTTTACTGAAATTGAAGGGCAGCCATCATTCACCCGAGTTACT
CCTAATGAAGAAAACGTATGCAATTCGGAACGAGTAACCCGATTGCGGTAAGCTAAATAG
CACCGGGAACTATCTACCCGGCAGTTGGAGAGAACCACGGTTGCAATTTTTTCTGAGATT
TGTCAGAATAGGAATGACTCCATCCAGGGAAGGTAATGGATGTGAAAATGGGAAATGGAG
CCATAAGAACGGAAGGCTGCATTATTGCCTTTATTTCCATGCCTGTGGGTTTTACTCTGT
AATTCAAGAAGATGTTCATGGGAAAGGTGCTGTTCGGACCATTCTTCGGCCGTGGGCCAC
CTCTTAGCACATTTCCCAGGGCTGTCTTTTTTTTGCATCAGGGTGTCCTTGAATTGCACC
CCCTGGGGTGTTTGCCCGGTGCTACCGCATNCCGGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               767-886, - strand, RNAz p=0.718577
               

               
               894-1012, + strand, RNAz p=0.834972

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               767-886, - strand, RNAz p=0.718577
               

               
               894-1012, + strand, RNAz p=0.834972

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               179-489, gnl|bosTau2|chr24 (2397715-2397414)
               


               
               508-1012, gnl|bosTau2|chr24 (2328431-2327936)
               

               
               508-1012, gnl|Hg17|chr18 (71896873-71896396)
               

               
               508-1012, gnl|Mm7|chr18 (83634862-83635331)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-489, gnl|bosTau2|chr24 (2397715-2397414)
               


               
               508-1012, gnl|bosTau2|chr24 (2328431-2327936)
               

               
               508-1012, gnl|Hg17|chr18 (71896873-71896396)
               

               
               508-1012, gnl|Mm7|chr18 (83634862-83635331)

	767-886, - strand, RNAz p=0.718577
	894-1012, + strand, RNAz p=0.834972

	179-489, gnl\|bosTau2\|chr24 (2397715-2397414)

	508-1012, gnl\|bosTau2\|chr24 (2328431-2327936)
	508-1012, gnl\|Hg17\|chr18 (71896873-71896396)
	508-1012, gnl\|Mm7\|chr18 (83634862-83635331)