Non-Coding RNA Search

Ss1.1-Ova1-OVRM10020G08.5

Sequence:


               
               ATACTGCCACCACCACCTTACCCAGGAAAACCCTGTGGCTCAGGAACTATGGCCCAGAGA
AGTGAAATGTTTGCCCATGGTCACATAATCAGTAACAAACCAATACTTGGCCTAGTGTTT
TTGTTTGTTTTTTCTCCATTTCTCCTGTTGTGTAGGGCAGGGTTGCAAATTCTTATCTGG
ATTTGACCCTTAGGCCTAGACTAAGTAATACATTTCTCTGAGAGCTGCCCTTTGGTGGCC
TTCTCTCAAGCCATTTCCTGAAATCAAGCCTAAATCCCCATATGATCATTCAAGGTTGGA
GATAAAGATATGGCAGATATTCCAGAGGCTTCTGGCTCTATTAAAGTTTAGTTTTGCTCA
TCTTTGGATCACGACACCTAATGTCCCCTAGTGACCCCTAGCTTTTTCCTATTGAACTTA
CACTATCTTAAATATCTCAAATATTCCATTTGCAGATCATTTTCAATCTTACTTTGACTT
TTACAAGAAATATTCCTAGGTGTAGTGTAGTCAGAGAAATAAAATATGAGGACTTAACAC
TTTCTCCCTAAAAGGAAATGTACGAGCATAGACAGAAAAACCCAAAACCAAAGAGCTGTT
TATGCTCAAATAATTTCCTCCTGTGTCTCTGAATGTAGGAATATTAAGAGGGAAAATGAA
CTAGACTTCTGTTTTTATCATGCTCTAATATGTTAGTCTGTTATACATGATCTATTTTGT
GAATGATGATATTCTGTCTCCAGGAGCATGAGCGAGTATTTGCAGGATAAAGAACTAGGT
AGGGAGCAGGCTGATGAGCCTCTAGGAAGCAAGAAGGGAGAAGTAGGCTCTGAGGGCAAA
AGGGTGGAGACAGGCATTTCTGAAGCCAAATGGTGTTGAAATAATATACCACAGAACTTT
TTCCTTGTCAGCGTAATCCAATTGAGAATGCCCAACTGCCCCTGATAAGAGTCACTCAGG
AGTAAAGAGCTTCGCTACCAGGGAAAGCAGCTTATGTGTGCATTTTGGCTCAGGAATGTG
CCAGACCAATGCTGGCCAAATGAGAAAGGGCTGCTGCAGGCTGGGGAACACAAGCCTCCT
GGGAGGATGGTGACTGGACTGCTCTCCTATATGCTGAGAAGAGAGTGTTCCGTTTTGTGT
AAAGGCAGTGCGTGATGCCACATGTTGAGGCCTTTGACATAGATTACCCGAGAAGGTGGC
AACTCTGACCTAAAAAGAGAAACCACTGTCAGGATTCATCTCCTTTTGGACAGGTCACCT
CATCATATGAGAAGACTTGGGAGGCATCTGTAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACTGCCACCACCACCTTACCCAGGAAAACCCTGTGGCTCAGGAACTATGGCCCAGAGA
AGTGAAATGTTTGCCCATGGTCACATAATCAGTAACAAACCAATACTTGGCCTAGTGTTT
TTGTTTGTTTTTTCTCCATTTCTCCTGTTGTGTAGGGCAGGGTTGCAAATTCTTATCTGG
ATTTGACCCTTAGGCCTAGACTAAGTAATACATTTCTCTGAGAGCTGCCCTTTGGTGGCC
TTCTCTCAAGCCATTTCCTGAAATCAAGCCTAAATCCCCATATGATCATTCAAGGTTGGA
GATAAAGATATGGCAGATATTCCAGAGGCTTCTGGCTCTATTAAAGTTTAGTTTTGCTCA
TCTTTGGATCACGACACCTAATGTCCCCTAGTGACCCCTAGCTTTTTCCTATTGAACTTA
CACTATCTTAAATATCTCAAATATTCCATTTGCAGATCATTTTCAATCTTACTTTGACTT
TTACAAGAAATATTCCTAGGTGTAGTGTAGTCAGAGAAATAAAATATGAGGACTTAACAC
TTTCTCCCTAAAAGGAAATGTACGAGCATAGACAGAAAAACCCAAAACCAAAGAGCTGTT
TATGCTCAAATAATTTCCTCCTGTGTCTCTGAATGTAGGAATATTAAGAGGGAAAATGAA
CTAGACTTCTGTTTTTATCATGCTCTAATATGTTAGTCTGTTATACATGATCTATTTTGT
GAATGATGATATTCTGTCTCCAGGAGCATGAGCGAGTATTTGCAGGATAAAGAACTAGGT
AGGGAGCAGGCTGATGAGCCTCTAGGAAGCAAGAAGGGAGAAGTAGGCTCTGAGGGCAAA
AGGGTGGAGACAGGCATTTCTGAAGCCAAATGGTGTTGAAATAATATACCACAGAACTTT
TTCCTTGTCAGCGTAATCCAATTGAGAATGCCCAACTGCCCCTGATAAGAGTCACTCAGG
AGTAAAGAGCTTCGCTACCAGGGAAAGCAGCTTATGTGTGCATTTTGGCTCAGGAATGTG
CCAGACCAATGCTGGCCAAATGAGAAAGGGCTGCTGCAGGCTGGGGAACACAAGCCTCCT
GGGAGGATGGTGACTGGACTGCTCTCCTATATGCTGAGAAGAGAGTGTTCCGTTTTGTGT
AAAGGCAGTGCGTGATGCCACATGTTGAGGCCTTTGACATAGATTACCCGAGAAGGTGGC
AACTCTGACCTAAAAAGAGAAACCACTGTCAGGATTCATCTCCTTTTGGACAGGTCACCT
CATCATATGAGAAGACTTGGGAGGCATCTGTAAATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               54-147, - strand, RNAz p=0.720347

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-147, - strand, RNAz p=0.720347

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               2-533, gnl|bosTau2|chr26 (14179804-14179286)
               

               
               2-533, gnl|canFam2|chr28 (17849935-17850290)
               

               
               2-533, gnl|dasNov1|scaffold_151889 (618-250)
               

               
               2-533, gnl|echTel1|scaffold_316526 (99941-100344)
               

               
               2-533, gnl|hg17|chr10 (104082796-104083158)
               

               
               2-533, gnl|loxAfr1|scaffold_13013 (8882-9300)
               

               
               2-533, gnl|mm7|chr19 (46135296-46134892)
               

               
               2-533, gnl|monDom2|scaffold_14 (60999863-60999545)
               

               
               2-533, gnl|panTro1|chr8 (105840111-105840485)
               

               
               2-533, gnl|rheMac2|chr9 (101990994-101991376)
               

               
               2-533, gnl|rn3|chr1 (251716792-251716421)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-533, gnl|bosTau2|chr26 (14179804-14179286)
               

               
               2-533, gnl|canFam2|chr28 (17849935-17850290)
               

               
               2-533, gnl|dasNov1|scaffold_151889 (618-250)
               

               
               2-533, gnl|echTel1|scaffold_316526 (99941-100344)
               

               
               2-533, gnl|hg17|chr10 (104082796-104083158)
               

               
               2-533, gnl|loxAfr1|scaffold_13013 (8882-9300)
               

               
               2-533, gnl|mm7|chr19 (46135296-46134892)
               

               
               2-533, gnl|monDom2|scaffold_14 (60999863-60999545)
               

               
               2-533, gnl|panTro1|chr8 (105840111-105840485)
               

               
               2-533, gnl|rheMac2|chr9 (101990994-101991376)
               

               
               2-533, gnl|rn3|chr1 (251716792-251716421)

	2-533, gnl\|bosTau2\|chr26 (14179804-14179286)
	2-533, gnl\|canFam2\|chr28 (17849935-17850290)
	2-533, gnl\|dasNov1\|scaffold_151889 (618-250)
	2-533, gnl\|echTel1\|scaffold_316526 (99941-100344)
	2-533, gnl\|hg17\|chr10 (104082796-104083158)
	2-533, gnl\|loxAfr1\|scaffold_13013 (8882-9300)
	2-533, gnl\|mm7\|chr19 (46135296-46134892)
	2-533, gnl\|monDom2\|scaffold_14 (60999863-60999545)
	2-533, gnl\|panTro1\|chr8 (105840111-105840485)
	2-533, gnl\|rheMac2\|chr9 (101990994-101991376)
	2-533, gnl\|rn3\|chr1 (251716792-251716421)