Non-Coding RNA Search

Ss1.1-Ova1-OVRM10021A07.5

Sequence:


               
               CAAAAAGCAGCCTGACTCTCCTGCGGGGTCCACGACCTCAGAAGAGAAGAAGGAGCCCGA
GAAGGAGAAGGCACCAGTGGTGGCGCCGGCTGGGGAGGTGGACAAGAAGATCAAGGAAGA
GGGCGAGGATTCTTCTGAGAAGTTCGAGCCCACTGCCCTCTACCAGTACCTCCGTGAGGA
GGACCTGGATGACAGCCCCAGGGGTGGAGTGGACATCCTCAAGTCCCTGGAGAACACAGT
CTCCACGGCCATCAGCAAAGCCCAGAATGGTGCGCCCTCGTGGGGCGGCTACCCCAGCAT
CCACGCGGCCTACCAGCTGCCTGGCACCGTGAAGCCGCTGCCAGCCGTGCAGAGTGTGCA
GATGCAGCCGTCCTATGCCAGCAGTGTGAAATCCCTGTCCTCGGAGCACAGTGCTCTTCT
GCACTCCCCGGGGAGCCTCACGCCGCCGCCCCACAAGAGCAATGTGTCGGCCATGGAGGA
GCTGGTGGAGAAGGTCACGGGCAAGGTCAGTGTGAAGAAGGAGGAGAGACCGGTGGAGAA
GGAGAAGGGCTCACCGGCCAAGGCCGTGTCCCCTGTGGCCAAGGAAAATAAAGACTTCCC
CAGAACGGAGGAGCCCAGCAATGGCAAGCCCCAGCCAAAGAAGGGCCCCGAAGCTGACGC
GGGGAAGGCCAAAAAGGAGGGCGCAGGGGATGCTCACACCCCAAACGGCACGGAGCCTCT
CAAGGCCAAAGTTACAAATGGCTGCAACAACCTGGGAATCATCACGGACCACTCACCCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAAGCAGCCTGACTCTCCTGCGGGGTCCACGACCTCAGAAGAGAAGAAGGAGCCCGA
GAAGGAGAAGGCACCAGTGGTGGCGCCGGCTGGGGAGGTGGACAAGAAGATCAAGGAAGA
GGGCGAGGATTCTTCTGAGAAGTTCGAGCCCACTGCCCTCTACCAGTACCTCCGTGAGGA
GGACCTGGATGACAGCCCCAGGGGTGGAGTGGACATCCTCAAGTCCCTGGAGAACACAGT
CTCCACGGCCATCAGCAAAGCCCAGAATGGTGCGCCCTCGTGGGGCGGCTACCCCAGCAT
CCACGCGGCCTACCAGCTGCCTGGCACCGTGAAGCCGCTGCCAGCCGTGCAGAGTGTGCA
GATGCAGCCGTCCTATGCCAGCAGTGTGAAATCCCTGTCCTCGGAGCACAGTGCTCTTCT
GCACTCCCCGGGGAGCCTCACGCCGCCGCCCCACAAGAGCAATGTGTCGGCCATGGAGGA
GCTGGTGGAGAAGGTCACGGGCAAGGTCAGTGTGAAGAAGGAGGAGAGACCGGTGGAGAA
GGAGAAGGGCTCACCGGCCAAGGCCGTGTCCCCTGTGGCCAAGGAAAATAAAGACTTCCC
CAGAACGGAGGAGCCCAGCAATGGCAAGCCCCAGCCAAAGAAGGGCCCCGAAGCTGACGC
GGGGAAGGCCAAAAAGGAGGGCGCAGGGGATGCTCACACCCCAAACGGCACGGAGCCTCT
CAAGGCCAAAGTTACAAATGGCTGCAACAACCTGGGAATCATCACGGACCACTCACCCGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               194-313, - strand, RNAz p=0.583331
               

               
               468-624, - strand, RNAz p=0.797018

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-313, - strand, RNAz p=0.583331
               

               
               468-624, - strand, RNAz p=0.797018

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr24 (3539820-3539044)
               

               
               1-780, gnl|Hg17|chr18 (71127799-71128566)
               

               
               1-780, gnl|Mm7|chr18 (84363966-84363181)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr24 (3539820-3539044)
               

               
               1-780, gnl|Hg17|chr18 (71127799-71128566)
               

               
               1-780, gnl|Mm7|chr18 (84363966-84363181)

	194-313, - strand, RNAz p=0.583331
	468-624, - strand, RNAz p=0.797018

	1-780, gnl\|bosTau2\|chr24 (3539820-3539044)
	1-780, gnl\|Hg17\|chr18 (71127799-71128566)
	1-780, gnl\|Mm7\|chr18 (84363966-84363181)