Non-Coding RNA Search

Ss1.1-Ova1-OVRM10024D08.5

Sequence:


               
               ATCCGTAAAAGAATGGATGTGTGTACATGTGTAACTGAATCACCTGGTTGTACAGCAGAA
ATTATCACAATATTGAAAATCAACTATACTTCAATAAAACTTTAAAAAAATGAAAGAAAA
AAACAAAAGCCTATGCATGGTACTGTTGTTGTATAGATCTGTCACCCTGACTGGAGGAGA
AACTTATGTTGAGATCCTGCCTTATATTTAACTGATTCTTAGAGACTAAGCCTGGCCTGT
TTGATTGTTTGGTAGGTCAGATTGAAGTTATCATGGATCGAAGACTCATGCAAGATGATA
ATCGTGGCCTTGAGCAAGGTGTCCACGATAACAAGATTACAGCTAATTTATTTCGAATAC
TGCTAGAAAAAAGAAGTGTCGTGAACATGGTAGGACAAAAAAACTCTCGTGTTCTGATAT
TTCTTGCTCTTTGTCATCCAAAATTATGGCTTTGTACTTTCTTTATTTTTTGCATTTCAG
TACTGAGATATCTTTATAATAGTCTTAGCCTGTAATCACAAGAAAGAGAACTTCACGTAC
ATTTATCATGTAAGATTTGCATTTATGCCATGTTATGTTTTATTTCTGCTTCTTATGTAG
ATATAAAATAATGTTAAGGAATCAGTTTGGGTGAAATCCTCTGAAGTTATTTTGGAAGAA
ATAGGAGTTGATTTTAAAGAATAGAGCTTAGTCACATACTTAGGAGATTAAGTTTGCTTA
GTAAAATTTACTGGAAACCTTAGAGTACTCATTTTTGTCTTAGATTCATCTGTTCAAAGT
GGATTTACTTGTCTGTCGTCTTGTTCCGTTTTCATTCCTCAAAGCAAAAATCCAGCATTC
CAGGTTAAATAGTCTGGCAAAAGTGAGAACCCACCTGATAGTGTTCTTCAGACAGTGAAA
AAGTTACCCTCAGAGCCTTCTATATACTGTTTGACTACCCACTTCAGATGGTCCTTGACC
TGCCCCCTTTTCTCCTACTCTGCTGTCCTTCTTTCTGCACTGACCATTTCAAATCTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCGTAAAAGAATGGATGTGTGTACATGTGTAACTGAATCACCTGGTTGTACAGCAGAA
ATTATCACAATATTGAAAATCAACTATACTTCAATAAAACTTTAAAAAAATGAAAGAAAA
AAACAAAAGCCTATGCATGGTACTGTTGTTGTATAGATCTGTCACCCTGACTGGAGGAGA
AACTTATGTTGAGATCCTGCCTTATATTTAACTGATTCTTAGAGACTAAGCCTGGCCTGT
TTGATTGTTTGGTAGGTCAGATTGAAGTTATCATGGATCGAAGACTCATGCAAGATGATA
ATCGTGGCCTTGAGCAAGGTGTCCACGATAACAAGATTACAGCTAATTTATTTCGAATAC
TGCTAGAAAAAAGAAGTGTCGTGAACATGGTAGGACAAAAAAACTCTCGTGTTCTGATAT
TTCTTGCTCTTTGTCATCCAAAATTATGGCTTTGTACTTTCTTTATTTTTTGCATTTCAG
TACTGAGATATCTTTATAATAGTCTTAGCCTGTAATCACAAGAAAGAGAACTTCACGTAC
ATTTATCATGTAAGATTTGCATTTATGCCATGTTATGTTTTATTTCTGCTTCTTATGTAG
ATATAAAATAATGTTAAGGAATCAGTTTGGGTGAAATCCTCTGAAGTTATTTTGGAAGAA
ATAGGAGTTGATTTTAAAGAATAGAGCTTAGTCACATACTTAGGAGATTAAGTTTGCTTA
GTAAAATTTACTGGAAACCTTAGAGTACTCATTTTTGTCTTAGATTCATCTGTTCAAAGT
GGATTTACTTGTCTGTCGTCTTGTTCCGTTTTCATTCCTCAAAGCAAAAATCCAGCATTC
CAGGTTAAATAGTCTGGCAAAAGTGAGAACCCACCTGATAGTGTTCTTCAGACAGTGAAA
AAGTTACCCTCAGAGCCTTCTATATACTGTTTGACTACCCACTTCAGATGGTCCTTGACC
TGCCCCCTTTTCTCCTACTCTGCTGTCCTTCTTTCTGCACTGACCATTTCAAATCTTTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               235-350, - strand, RNAz p=0.706706

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-350, - strand, RNAz p=0.706706

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               7-127, gnl|bosTau2|chr11 (21590479-21590600)
               


               
               165-861, gnl|bosTau2|chr7 (68668209-68667519)
               

               
               165-861, gnl|Hg17|chr5 (109211138-109211905)
               

               
               165-861, gnl|Mm7|chr17 (62943860-62944561)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-127, gnl|bosTau2|chr11 (21590479-21590600)
               


               
               165-861, gnl|bosTau2|chr7 (68668209-68667519)
               

               
               165-861, gnl|Hg17|chr5 (109211138-109211905)
               

               
               165-861, gnl|Mm7|chr17 (62943860-62944561)

	7-127, gnl\|bosTau2\|chr11 (21590479-21590600)

	165-861, gnl\|bosTau2\|chr7 (68668209-68667519)
	165-861, gnl\|Hg17\|chr5 (109211138-109211905)
	165-861, gnl\|Mm7\|chr17 (62943860-62944561)