Non-Coding RNA Search

Ss1.1-Ova1-OVRM10025B09.5

Sequence:


               
               CTCTAGGGGTCTTCTCCATCTAATGGCTTGAGGACTGAAATGTTGAGGAAAGAAAGGTGA
AGAGAAAGATAGATAGATTTGAAAGAAGTAAGTTGACTTTAAAGGAAGATAGTAAGCAAA
TAACCAGACACAGAATATATGGATCTGGAAAAAATGGTGAGTGAAGTAGGTGTACGTGTG
AAATTAGTGGGATGTGGGGCTAAATGATGGCTTAAAAAAAAAAAACCAAACTAGAAATTA
TCAGTTGAGGCTTAAAGAGAGAGCAAAGGGCATTGCTCCCCCTCACATTTAGTTCTTTAT
GTTATAATTGTCTAAACTGTTTATTTCTCCCCCCCTCCCCCAGGTTTCATTTTTTGAGGA
AGAACAGAACATCTTATCCCGGAGCACAAGCCCTTGGATCCCCCAGTTACAGTATGCCTT
TCAGGACAAACATAACCTTTATCTGGTCATGGAATATCAGCCTGGAGGGGATTTGCTGTC
ACTTTTGAATAGATATGAGGACCAATTAGATGAAAATATGATACAGTTTTACCTAGCTGA
AATGATTTTGGCTGTTCACAGCGTTCATCAGATGGGATATGTACATCGAGACATCAAGCC
TGAGAACATTCTCATCGACCGAACGGGACACATCAAGCTGGTGGACTTTGGATCAGCTGC
TAAGATGAACTCAAATAAGATGGTGAATGCCAAACTCCCGGTTGGGACCCCAGATTACAT
GGCCCCTGAAGTGCTGACTGTGATGAATGGGGATGGAAAAGGTGCCTATGGCCTAGACTG
TGATTGGTGGTCAGTGGGAGTTATTGCTTATGAGATGGTTTATGGAAGGTCCCCATTCAC
TGAGGGAACCTCAGCCAGAACCTTCAATAACATCATGAATTTCCAGCGGTTTTTGAAGTT
TCCAGATGACCCCAAAGTTAGCAGTGAATTGCTTGATCTGATCCAAAGTTTATTGTGTGG
CCAGAAAGAGAGACTGAAGTTTGAAGGCCTTTGCTGTCATCCTTTCTTCTCTAAAATCGA
CTGGAATAACATTCGTAACTCTCCTCCCCCCTTCGTTCCCACCCTCAAGTCTGATGATGA
CACCTCCAATTTTGATGAACCAGAGAAGAATTCGTGGGTTTCATCCTCTCCGTGCCAGCT
GAACCCCTCGGGTTTCTCGGGCGAAGAACTGCCGTTTGTGGGGTTTTCCTATAGCAAGGC
ACTGGGAATTCTTGGTAGATCTGAGTCTGTTGTGTCAAGTCTGGACTCCCCTGCCAAGAC
TAGCTCCATGGAAAAGAAACTTCTCATCAAAAGCAAAGAGCTGCAAGACTCCCAGGACAA
GGGGCACAAGGTATTTATTTCCACAGCCGGCATCCTGGCGGGGTGCACGATCCTCCCGTC
AATATATGCCAAGGGATCCACCCGGGGCCGGTGCTGGCGTGCACCCACCTGAACCTTCCC
TCGCCGAAGTCGCGCCTCCTCCGGCAGCTCAGAGGGAGATGAATTCCGGCCTTGATGCTG
CCGTAAATCCTTTAAATCTTAACCAGAGGAGGCCCTGGATGTAAAACGGCCCGTTCCTCA
CCAGGACCCAGTCAGACGTCTGCTTCTTCCGGCCGGTGGCACTGGTCCTCACCTGTGGCC
CAGATGCAGCCCACCTGCTCTGAGTGATGAGAAGTCTCTCTTCCTAGGACTTTAAAAACT
CCTGCTTATGTCTCTGCTGCCACTGTGTTGATTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTAGGGGTCTTCTCCATCTAATGGCTTGAGGACTGAAATGTTGAGGAAAGAAAGGTGA
AGAGAAAGATAGATAGATTTGAAAGAAGTAAGTTGACTTTAAAGGAAGATAGTAAGCAAA
TAACCAGACACAGAATATATGGATCTGGAAAAAATGGTGAGTGAAGTAGGTGTACGTGTG
AAATTAGTGGGATGTGGGGCTAAATGATGGCTTAAAAAAAAAAAACCAAACTAGAAATTA
TCAGTTGAGGCTTAAAGAGAGAGCAAAGGGCATTGCTCCCCCTCACATTTAGTTCTTTAT
GTTATAATTGTCTAAACTGTTTATTTCTCCCCCCCTCCCCCAGGTTTCATTTTTTGAGGA
AGAACAGAACATCTTATCCCGGAGCACAAGCCCTTGGATCCCCCAGTTACAGTATGCCTT
TCAGGACAAACATAACCTTTATCTGGTCATGGAATATCAGCCTGGAGGGGATTTGCTGTC
ACTTTTGAATAGATATGAGGACCAATTAGATGAAAATATGATACAGTTTTACCTAGCTGA
AATGATTTTGGCTGTTCACAGCGTTCATCAGATGGGATATGTACATCGAGACATCAAGCC
TGAGAACATTCTCATCGACCGAACGGGACACATCAAGCTGGTGGACTTTGGATCAGCTGC
TAAGATGAACTCAAATAAGATGGTGAATGCCAAACTCCCGGTTGGGACCCCAGATTACAT
GGCCCCTGAAGTGCTGACTGTGATGAATGGGGATGGAAAAGGTGCCTATGGCCTAGACTG
TGATTGGTGGTCAGTGGGAGTTATTGCTTATGAGATGGTTTATGGAAGGTCCCCATTCAC
TGAGGGAACCTCAGCCAGAACCTTCAATAACATCATGAATTTCCAGCGGTTTTTGAAGTT
TCCAGATGACCCCAAAGTTAGCAGTGAATTGCTTGATCTGATCCAAAGTTTATTGTGTGG
CCAGAAAGAGAGACTGAAGTTTGAAGGCCTTTGCTGTCATCCTTTCTTCTCTAAAATCGA
CTGGAATAACATTCGTAACTCTCCTCCCCCCTTCGTTCCCACCCTCAAGTCTGATGATGA
CACCTCCAATTTTGATGAACCAGAGAAGAATTCGTGGGTTTCATCCTCTCCGTGCCAGCT
GAACCCCTCGGGTTTCTCGGGCGAAGAACTGCCGTTTGTGGGGTTTTCCTATAGCAAGGC
ACTGGGAATTCTTGGTAGATCTGAGTCTGTTGTGTCAAGTCTGGACTCCCCTGCCAAGAC
TAGCTCCATGGAAAAGAAACTTCTCATCAAAAGCAAAGAGCTGCAAGACTCCCAGGACAA
GGGGCACAAGGTATTTATTTCCACAGCCGGCATCCTGGCGGGGTGCACGATCCTCCCGTC
AATATATGCCAAGGGATCCACCCGGGGCCGGTGCTGGCGTGCACCCACCTGAACCTTCCC
TCGCCGAAGTCGCGCCTCCTCCGGCAGCTCAGAGGGAGATGAATTCCGGCCTTGATGCTG
CCGTAAATCCTTTAAATCTTAACCAGAGGAGGCCCTGGATGTAAAACGGCCCGTTCCTCA
CCAGGACCCAGTCAGACGTCTGCTTCTTCCGGCCGGTGGCACTGGTCCTCACCTGTGGCC
CAGATGCAGCCCACCTGCTCTGAGTGATGAGAAGTCTCTCTTCCTAGGACTTTAAAAACT
CCTGCTTATGTCTCTGCTGCCACTGTGTTGATTATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|3599507|gb|AAC72822.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3599507|gb|AAC72822.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               419-651, gnl|bosTau2|chr14 (18229075-18228846)
               

               
               419-651, gnl|Hg17|chr6 (36593520-36583332)
               

               
               419-651, gnl|Mm7|chr17 (27172171-27166571)
               


               
               1041-1226, gnl|bosTau2|chr17 (30480465-30480650)
               

               
               1041-1226, gnl|Hg17|chr12 (118703913-118703728)
               

               
               1041-1226, gnl|Mm7|chr5 (115136757-115136942)
               


               
               1227-1716, gnl|bosTau2|chr17 (30501872-30502357)
               

               
               1227-1716, gnl|Hg17|chr12 (118685587-118685084)
               

               
               1227-1716, gnl|Mm7|chr5 (115154888-115155383)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               419-651, gnl|bosTau2|chr14 (18229075-18228846)
               

               
               419-651, gnl|Hg17|chr6 (36593520-36583332)
               

               
               419-651, gnl|Mm7|chr17 (27172171-27166571)
               


               
               1041-1226, gnl|bosTau2|chr17 (30480465-30480650)
               

               
               1041-1226, gnl|Hg17|chr12 (118703913-118703728)
               

               
               1041-1226, gnl|Mm7|chr5 (115136757-115136942)
               


               
               1227-1716, gnl|bosTau2|chr17 (30501872-30502357)
               

               
               1227-1716, gnl|Hg17|chr12 (118685587-118685084)
               

               
               1227-1716, gnl|Mm7|chr5 (115154888-115155383)

	419-651, gnl\|bosTau2\|chr14 (18229075-18228846)
	419-651, gnl\|Hg17\|chr6 (36593520-36583332)
	419-651, gnl\|Mm7\|chr17 (27172171-27166571)

	1041-1226, gnl\|bosTau2\|chr17 (30480465-30480650)
	1041-1226, gnl\|Hg17\|chr12 (118703913-118703728)
	1041-1226, gnl\|Mm7\|chr5 (115136757-115136942)

	1227-1716, gnl\|bosTau2\|chr17 (30501872-30502357)
	1227-1716, gnl\|Hg17\|chr12 (118685587-118685084)
	1227-1716, gnl\|Mm7\|chr5 (115154888-115155383)