Non-Coding RNA Search

Ss1.1-Ova1-OVRM10025H06.5

Sequence:


               
               ATAAAATGTAGGAGACAGATTCGGATATGGGACAAAATAGACTCGTTGTTCTGAATAGAT
TTAAACTCTTCCAACAGATAGATCTCTCTCACAGAGGTAGTCTTCCTTGCTGTAGTTCAC
CACAAAAATGAGAGTAGATGAGAATTAGTGTATCAGTTATATGGATCAAGAGTCTAGTAA
AAAGTAACTTAGTGTAATTTCAAATGACTATCAGTAGCAGTTGTGATCACCAAGCCTTTG
TTATATACAACCTGTGATTCTTTCTTCAATAGAACTTATATTTTTATAAATTTTGGCCAT
AAAGTATGGGTTTATAGTAAGCTATAATGTTGAAGATGCTAAGATATAAAACACTGTTTT
GTATTCTCAAGAATAATTACAAAATGGAGTATTTTGTGATAATCATGCTTACAATATGAT
CACCTTTATATGAATCTGGTTATTTGCCTTTTAAATTGAGAATTTATCTAAGAGTCAGTG
ATTTGTGTACCCATTCAGTGTTGCACATACCACAATAATGTTGGCAATTAGGAAATCTAA
AGTCTGAACCATATGACTAAGCATAGTAAGTACAGGAATCTCCCAGTTATAATGTCCTTG
ACTTTTGACCCCCAACTCCAACTTTTAACCTCAAAAAAAAATTTTTTTTTATTATACACA
GTAATGGCCAAACTCATATATAGGATTTCCTGAAGATTACAGTCAGAGGTAACACAAGGT
AATACAAACACATTTATGCTATGTTTCTTAAAAAAAATTCACCAGATTTTAGGATCAGGT
TTCCATAACATGGACTAAGAAGGAGAAATAAATTAGCTTAATTATAGTCTTGGTATTTTT
TCAAGATAAAGTGGTAATAGGACATCACAGACTTCTACTTATGTATGCCTCTTGGTTCAC
ACCATTGACTTCATTTGAACATGAATGTACAGTCATTCTTTATCCCTGGAGAAAACTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAATGTAGGAGACAGATTCGGATATGGGACAAAATAGACTCGTTGTTCTGAATAGAT
TTAAACTCTTCCAACAGATAGATCTCTCTCACAGAGGTAGTCTTCCTTGCTGTAGTTCAC
CACAAAAATGAGAGTAGATGAGAATTAGTGTATCAGTTATATGGATCAAGAGTCTAGTAA
AAAGTAACTTAGTGTAATTTCAAATGACTATCAGTAGCAGTTGTGATCACCAAGCCTTTG
TTATATACAACCTGTGATTCTTTCTTCAATAGAACTTATATTTTTATAAATTTTGGCCAT
AAAGTATGGGTTTATAGTAAGCTATAATGTTGAAGATGCTAAGATATAAAACACTGTTTT
GTATTCTCAAGAATAATTACAAAATGGAGTATTTTGTGATAATCATGCTTACAATATGAT
CACCTTTATATGAATCTGGTTATTTGCCTTTTAAATTGAGAATTTATCTAAGAGTCAGTG
ATTTGTGTACCCATTCAGTGTTGCACATACCACAATAATGTTGGCAATTAGGAAATCTAA
AGTCTGAACCATATGACTAAGCATAGTAAGTACAGGAATCTCCCAGTTATAATGTCCTTG
ACTTTTGACCCCCAACTCCAACTTTTAACCTCAAAAAAAAATTTTTTTTTATTATACACA
GTAATGGCCAAACTCATATATAGGATTTCCTGAAGATTACAGTCAGAGGTAACACAAGGT
AATACAAACACATTTATGCTATGTTTCTTAAAAAAAATTCACCAGATTTTAGGATCAGGT
TTCCATAACATGGACTAAGAAGGAGAAATAAATTAGCTTAATTATAGTCTTGGTATTTTT
TCAAGATAAAGTGGTAATAGGACATCACAGACTTCTACTTATGTATGCCTCTTGGTTCAC
ACCATTGACTTCATTTGAACATGAATGTACAGTCATTCTTTATCCCTGGAGAAAACTTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               308-427, + strand, RNAz p=0.733608

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-427, + strand, RNAz p=0.733608

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               190-788, gnl|bosTau2|chr11 (65290723-65291306)
               

               
               190-788, gnl|Hg17|chr2 (11401495-11400902)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-788, gnl|bosTau2|chr11 (65290723-65291306)
               

               
               190-788, gnl|Hg17|chr2 (11401495-11400902)

	190-788, gnl\|bosTau2\|chr11 (65290723-65291306)
	190-788, gnl\|Hg17\|chr2 (11401495-11400902)