Non-Coding RNA Search

Ss1.1-Ova1-OVRM10028G03.5

Sequence:


               
               TGGATGCTTTTGTAGCAATGACAACTATTTTGCTATCAGAATGAGTCTGCTCCACCAGAG
AAGCAAATGAGGTTTGAATTCAAATTTCAGCAGTTTCTAGCTAGGAGAGATAATTAGTTC
TCTAGCTACCTAAGGAAGCTATGGTTTCCCCCTCAGAAAGGCTTCCTGGGGAACTGCCTT
AGAGGCAGACTCTCTTGAGATCCTGATTTCCAAGCCTTTGGTGAAATGCCAAAATACCAT
CTGACACAAAGATCAGGAGTTTCCAAATCTAAAAGTAAAGATTTCCTTTTAATTGCCAGT
TCACACTCCCTGGAGAGAACCCCCTAAGGCTGGCAAGGTCACTACCCCACACATTGTCAT
GCAAGAGCCTCACTTCCCAGAAGTCCTTCTGACTCTGCATATGACTGTGCAGCGAGTGAC
TGCTTTCAGGATGTTAACAATCTAGTATCAGATGCTATCAGCAGACCCAAGAGCAGACCT
TACAGGCAACCTAAGAGAGTCTTTCAATGGCCCTCATGAAAGCCTGGCTGTCTATCCATC
CATTTAAATAAAGAACTACCTCCCTCCCCTAAACCAAGCACAGTTCAGAAGTTGTTTCCT
AGGCAGGTCTGGAAGGAAGCTTCCAGTGAATGGTGGAGAACGGAGAAAGATTGAAATAAA
ACCACAAAGTGGCCCCACCTTTCCGTCACTTCTTCCTGTCCTGTGAGACACATCTAGAGT
GGCTGTCAATCAATTACCTACCAAAGCCTACTTCAGGATCAAATTTCTCCATGTAAAAAT
TTTACATAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATGCTTTTGTAGCAATGACAACTATTTTGCTATCAGAATGAGTCTGCTCCACCAGAG
AAGCAAATGAGGTTTGAATTCAAATTTCAGCAGTTTCTAGCTAGGAGAGATAATTAGTTC
TCTAGCTACCTAAGGAAGCTATGGTTTCCCCCTCAGAAAGGCTTCCTGGGGAACTGCCTT
AGAGGCAGACTCTCTTGAGATCCTGATTTCCAAGCCTTTGGTGAAATGCCAAAATACCAT
CTGACACAAAGATCAGGAGTTTCCAAATCTAAAAGTAAAGATTTCCTTTTAATTGCCAGT
TCACACTCCCTGGAGAGAACCCCCTAAGGCTGGCAAGGTCACTACCCCACACATTGTCAT
GCAAGAGCCTCACTTCCCAGAAGTCCTTCTGACTCTGCATATGACTGTGCAGCGAGTGAC
TGCTTTCAGGATGTTAACAATCTAGTATCAGATGCTATCAGCAGACCCAAGAGCAGACCT
TACAGGCAACCTAAGAGAGTCTTTCAATGGCCCTCATGAAAGCCTGGCTGTCTATCCATC
CATTTAAATAAAGAACTACCTCCCTCCCCTAAACCAAGCACAGTTCAGAAGTTGTTTCCT
AGGCAGGTCTGGAAGGAAGCTTCCAGTGAATGGTGGAGAACGGAGAAAGATTGAAATAAA
ACCACAAAGTGGCCCCACCTTTCCGTCACTTCTTCCTGTCCTGTGAGACACATCTAGAGT
GGCTGTCAATCAATTACCTACCAAAGCCTACTTCAGGATCAAATTTCTCCATGTAAAAAT
TTTACATAGCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               530-643, - strand, RNAz p=0.861601

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               530-643, - strand, RNAz p=0.861601

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-756, gnl|bosTau2|chr7 (21496354-21495586)
               

               
               4-756, gnl|Hg17|chr5 (176658132-176657341)
               

               
               4-756, gnl|Mm7|chr13 (54396910-54396221)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-756, gnl|bosTau2|chr7 (21496354-21495586)
               

               
               4-756, gnl|Hg17|chr5 (176658132-176657341)
               

               
               4-756, gnl|Mm7|chr13 (54396910-54396221)

	4-756, gnl\|bosTau2\|chr7 (21496354-21495586)
	4-756, gnl\|Hg17\|chr5 (176658132-176657341)
	4-756, gnl\|Mm7\|chr13 (54396910-54396221)