Non-Coding RNA Search

Ss1.1-Ova1-OVRM10033G07.5

Sequence:


               
               TTATTTGAATGGTATCTCATTGTTCTTGCCCTTCACAAATCACATCAGTTCATTACTTTT
TATTTTGTTCTTCTAATTTAATTTTTTTTAACTTGCTACCATCTGGCCTCAGAAAACTTT
GTGATGAAATTTTGAAAATTTTAGCAGAGATAACTTCATTTTTTTCTTATCTACATGACT
TTGTAAATGAGCCAGCTTTGTGATGTTCAGATAAATCAAAACCCAGCAACCCAATAAAGC
AACAAGACAATTAAGATTTTGAAAGACTCAAACAACTTGCTCAGGAATTGCGACCAAGTA
TGCTGTATACATAAACTAATCAGGACTGTTTCATTTCTCCCTTTACAGTTCCCCTTGAAC
CTTGAACCTAACAATAAGAAATAATAGAAAACCAAAGCCAGGCTATGGCTCACTAAACTA
ACACCCTTAAAAGGCATTTGACTGTGACTGGATATGAATGAGAATGTTCCCCCAAATCTT
CTGCTGAAAGATGGGGCCTCCTGGGGGAGCCTTTAATTGTTTTCCCCTTTTTTCTCTGCG
GGAGTCACAGAGCTCAGCTTCTTCACAAAACCAGTATTAGTGAGGAGATCAAAACCAAAC
CTCTAATGTGGTCAGTATTTGACCACCTTTTTATAAAGTTAATCAAACCTGTTAAGAAAA
ATGTAAAGTAGCAGAATGTAATATTCTGGAAGGAAATTCCAGAAATAATATTCTAGCAAT
TTCACCATGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTTGAATGGTATCTCATTGTTCTTGCCCTTCACAAATCACATCAGTTCATTACTTTT
TATTTTGTTCTTCTAATTTAATTTTTTTTAACTTGCTACCATCTGGCCTCAGAAAACTTT
GTGATGAAATTTTGAAAATTTTAGCAGAGATAACTTCATTTTTTTCTTATCTACATGACT
TTGTAAATGAGCCAGCTTTGTGATGTTCAGATAAATCAAAACCCAGCAACCCAATAAAGC
AACAAGACAATTAAGATTTTGAAAGACTCAAACAACTTGCTCAGGAATTGCGACCAAGTA
TGCTGTATACATAAACTAATCAGGACTGTTTCATTTCTCCCTTTACAGTTCCCCTTGAAC
CTTGAACCTAACAATAAGAAATAATAGAAAACCAAAGCCAGGCTATGGCTCACTAAACTA
ACACCCTTAAAAGGCATTTGACTGTGACTGGATATGAATGAGAATGTTCCCCCAAATCTT
CTGCTGAAAGATGGGGCCTCCTGGGGGAGCCTTTAATTGTTTTCCCCTTTTTTCTCTGCG
GGAGTCACAGAGCTCAGCTTCTTCACAAAACCAGTATTAGTGAGGAGATCAAAACCAAAC
CTCTAATGTGGTCAGTATTTGACCACCTTTTTATAAAGTTAATCAAACCTGTTAAGAAAA
ATGTAAAGTAGCAGAATGTAATATTCTGGAAGGAAATTCCAGAAATAATATTCTAGCAAT
TTCACCATGTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               554-672, - strand, RNAz p=0.592729

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               554-672, - strand, RNAz p=0.592729

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-730, gnl|bosTau2|chr27 (6436740-6437460)
               

               
               1-730, gnl|Hg17|chr4 (183477148-183477915)
               

               
               1-730, gnl|Mm7|chr8 (47579995-47579031)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-730, gnl|bosTau2|chr27 (6436740-6437460)
               

               
               1-730, gnl|Hg17|chr4 (183477148-183477915)
               

               
               1-730, gnl|Mm7|chr8 (47579995-47579031)

	1-730, gnl\|bosTau2\|chr27 (6436740-6437460)
	1-730, gnl\|Hg17\|chr4 (183477148-183477915)
	1-730, gnl\|Mm7\|chr8 (47579995-47579031)