Non-Coding RNA Search

Ss1.1-Ova1-OVRM10033H06.5

Sequence:


               
               CGGAGTCACTTCCGAAGAGAGAGAACCGCCATGAAGAGAGAAGGGGGTGCCGCCCACCTC
TGCTCCGACAGCCTCCCCGAGACCCAGCAGCAAGACGGCAACCACGCACCCAGCTGCTCC
AGCCACAGCTCATGCCGCCGTCGCCAGCGGCGCCGACATGACAAGGCGCTGCATGCCCGC
TAGGCCAGGTTTCCCCTCATCCCCAGCCCCAGGGTCGTCGCCCCCGCGCTGCCATCTGAG
ACCCGGTAGTACCGTCCCTGCTGCAGCGGGAAAGAGAACAGAGAGTCCTGGGGACAGGAA
GCGGTCAATTATAGATTTCTTCAAACCAGCTTCAAAACAAGACAAACATATGTTGGATTC
TCCACAAAAATCGAACATCAGATATGGAGGAAGTGGATTGTCCATCACTGGAAGAGAGCA
GTTTGAAAAGAAACTGTCCTCACCAAAAAGATCTAAACCTAAAAGGGTGTCATCAGAAAA
AAGCCCTGTCTTGGAGGCGTTCATGAAAGGTGTTAAAGAGCACCATAGAGATCGTGGTGT
ACATGAGTCACATCAGCCTTATGTGTCACTCGCCACCAAATGTCCAAAGGCAGTTACAAA
ATATGTTACTCCTTCATATCTCTTGTCAGGAGAAACGAAGAAAAAACATCAATCTCCAGA
GGGAAGGAAGTCACATTTCATTCATGAAAATAGCAGGGAGAAGAATGATGGAGATCGAGG
CAAGATCAGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGTCACTTCCGAAGAGAGAGAACCGCCATGAAGAGAGAAGGGGGTGCCGCCCACCTC
TGCTCCGACAGCCTCCCCGAGACCCAGCAGCAAGACGGCAACCACGCACCCAGCTGCTCC
AGCCACAGCTCATGCCGCCGTCGCCAGCGGCGCCGACATGACAAGGCGCTGCATGCCCGC
TAGGCCAGGTTTCCCCTCATCCCCAGCCCCAGGGTCGTCGCCCCCGCGCTGCCATCTGAG
ACCCGGTAGTACCGTCCCTGCTGCAGCGGGAAAGAGAACAGAGAGTCCTGGGGACAGGAA
GCGGTCAATTATAGATTTCTTCAAACCAGCTTCAAAACAAGACAAACATATGTTGGATTC
TCCACAAAAATCGAACATCAGATATGGAGGAAGTGGATTGTCCATCACTGGAAGAGAGCA
GTTTGAAAAGAAACTGTCCTCACCAAAAAGATCTAAACCTAAAAGGGTGTCATCAGAAAA
AAGCCCTGTCTTGGAGGCGTTCATGAAAGGTGTTAAAGAGCACCATAGAGATCGTGGTGT
ACATGAGTCACATCAGCCTTATGTGTCACTCGCCACCAAATGTCCAAAGGCAGTTACAAA
ATATGTTACTCCTTCATATCTCTTGTCAGGAGAAACGAAGAAAAAACATCAATCTCCAGA
GGGAAGGAAGTCACATTTCATTCATGAAAATAGCAGGGAGAAGAATGATGGAGATCGAGG
CAAGATCAGTGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8WW40_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WW40_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.858811
               

               
               616-726, - strand, RNAz p=0.705969

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.858811
               

               
               616-726, - strand, RNAz p=0.705969

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-303, gnl|bosTau2|chr26 (13331728-13332030)
               

               
               1-303, gnl|Hg17|chr10 (102662703-102663003)
               

               
               1-303, gnl|Mm7|chr19 (44825029-44825329)
               


               
               340-732, gnl|bosTau2|chr26 (13335138-13335530)
               

               
               340-732, gnl|Hg17|chr10 (102666315-102666716)
               

               
               340-732, gnl|Mm7|chr19 (44828804-44829205)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-303, gnl|bosTau2|chr26 (13331728-13332030)
               

               
               1-303, gnl|Hg17|chr10 (102662703-102663003)
               

               
               1-303, gnl|Mm7|chr19 (44825029-44825329)
               


               
               340-732, gnl|bosTau2|chr26 (13335138-13335530)
               

               
               340-732, gnl|Hg17|chr10 (102666315-102666716)
               

               
               340-732, gnl|Mm7|chr19 (44828804-44829205)

	80-199, - strand, RNAz p=0.858811
	616-726, - strand, RNAz p=0.705969

	1-303, gnl\|bosTau2\|chr26 (13331728-13332030)
	1-303, gnl\|Hg17\|chr10 (102662703-102663003)
	1-303, gnl\|Mm7\|chr19 (44825029-44825329)

	340-732, gnl\|bosTau2\|chr26 (13335138-13335530)
	340-732, gnl\|Hg17\|chr10 (102666315-102666716)
	340-732, gnl\|Mm7\|chr19 (44828804-44829205)