Non-Coding RNA Search

Ss1.1-Ova1-OVRM10034B05.5

Sequence:


               
               TTAACAGCCAAGTCATATTGTTGTTCATACAGACTTGTGGTCGACACAGACCCTGTATCC
TCTAGTGAGTCTATTAGCCCATCCTGTCCTCAGGCTCTGGAGCTTGACAGTAAGGGTCAC
ATCTGCCTCCTGTTCATGGTAATTATGGGTAACATGATGTTAAATTAAATTTATAGGCAA
TGTTGTACTTGAAATTCAAGGTGACCTCGTTGTTGTGCAGATGTAGCTTTAAGAAAGACA
AAAGAACCATTGACAAGAAAGTAATCTGTATCAAAAGCATATTAAATGGCCTCAGGAAAA
AAATGTGTTTCCTAGGATTTTGCATTCTATGACCCTTACTACTTCTGTTTTAGCAATGAA
ACATTTAGCCTGACTGCTCTATAAATAGATTTTCAATTTATATTGCCAGATAATACACAA
TCTGATGAGAGCGAAGATGATTTTCCTGAGAGGCTAGGCTAATTGGTTTATATATTTTTG
TCTTGTGTGTGTCTCAGTTTTTCCCTTGGCTTCTAAGCCTTTGAGGCAAATGTCACTTTC
TCCAACAGAATATTCTCTTGGCTGACTTCAACAAAGGAGTGACCAAGTCTGCTCTGCATT
TTCTGGCAGTGATGTTGCAGTAATCAGAATCAAATAAGGTCCTAAGGAGAATCTGGCTCA
GACAATAGGAGTCACAGAGTGAAAACAAACACAGATCCTTACTATTAGCCCTCTGCATGC
TGGGAGCACAACGCTAGTTGACAGTCACATTCTGGTGCATTTTATAAAACTGAGCAATTT
CCCAGGGTGATTTAGACAAGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAACAGCCAAGTCATATTGTTGTTCATACAGACTTGTGGTCGACACAGACCCTGTATCC
TCTAGTGAGTCTATTAGCCCATCCTGTCCTCAGGCTCTGGAGCTTGACAGTAAGGGTCAC
ATCTGCCTCCTGTTCATGGTAATTATGGGTAACATGATGTTAAATTAAATTTATAGGCAA
TGTTGTACTTGAAATTCAAGGTGACCTCGTTGTTGTGCAGATGTAGCTTTAAGAAAGACA
AAAGAACCATTGACAAGAAAGTAATCTGTATCAAAAGCATATTAAATGGCCTCAGGAAAA
AAATGTGTTTCCTAGGATTTTGCATTCTATGACCCTTACTACTTCTGTTTTAGCAATGAA
ACATTTAGCCTGACTGCTCTATAAATAGATTTTCAATTTATATTGCCAGATAATACACAA
TCTGATGAGAGCGAAGATGATTTTCCTGAGAGGCTAGGCTAATTGGTTTATATATTTTTG
TCTTGTGTGTGTCTCAGTTTTTCCCTTGGCTTCTAAGCCTTTGAGGCAAATGTCACTTTC
TCCAACAGAATATTCTCTTGGCTGACTTCAACAAAGGAGTGACCAAGTCTGCTCTGCATT
TTCTGGCAGTGATGTTGCAGTAATCAGAATCAAATAAGGTCCTAAGGAGAATCTGGCTCA
GACAATAGGAGTCACAGAGTGAAAACAAACACAGATCCTTACTATTAGCCCTCTGCATGC
TGGGAGCACAACGCTAGTTGACAGTCACATTCTGGTGCATTTTATAAAACTGAGCAATTT
CCCAGGGTGATTTAGACAAGACCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               114-233, + strand, RNAz p=0.737915

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-233, + strand, RNAz p=0.737915

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               36-804, gnl|bosTau2|chr20 (14089889-14089132)
               

               
               36-804, gnl|Hg17|chr5 (53373140-53372346)
               

               
               36-804, gnl|Mm7|chr13 (111198482-111199237)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-804, gnl|bosTau2|chr20 (14089889-14089132)
               

               
               36-804, gnl|Hg17|chr5 (53373140-53372346)
               

               
               36-804, gnl|Mm7|chr13 (111198482-111199237)

	36-804, gnl\|bosTau2\|chr20 (14089889-14089132)
	36-804, gnl\|Hg17\|chr5 (53373140-53372346)
	36-804, gnl\|Mm7\|chr13 (111198482-111199237)