Ss1.1-Ova1-OVRM10035H11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATTTTTAAAGCTCCCGGCTTCCTTCTAGGCTGGCCCCTCCCGCATCCTCCTAATCTCTC CCCTGGCCCCCTGGCCCCTTTTCTCGCCTCTGCCTCCCTGACAGCCTTCAGTTCCCCTTC CCCCTCGGACCCTCCTGGCCTCCCACCTGGTTCCTGGGGGCAGGGTGGACAGGGAGCAGC CCGAGCCAAGGCTGAAGGGCGGTTCTCGGGGCCAGGGTGCCTGCTTGCTGCGCCCCCCGG GTTATGACGACCCCCAATAAAGGAAACAAAGCCTTGAAGGTGAAGCGGGAGCCAGGCGAG AATGGCACCAGCCTGACGGACGAGGAGCTGGTGACCATGTCCGTGCGGGAGCTGAACCAG CACCTGCGGGGCCTGTCCAAGGAGGAGATCATCCAGCTGAAGCAGCGCCGGCGCACGCTC AAGAACCGCGGCTACGCCGCCAGCTGCCGCGTGAAGCGGGTGACCCAGAAGGAGGAGCTG GAGAAGCAGAAGGCGGAGCTGCAGCAGGAGGTGGAGAAGCTGGCCTCCGAGAACGCCAGC ATGAAGCTGGAGCTCGACGCCCTGCGCTCCAAGTACGAGGCCCTGCAGAACTTCGCCAGG ACGGTGGCCCGAAGCCCCGTGGCACCGGCGCGGGGCCCCCTTGCTGCCAGCTTGGGGCCC CTCGTCCCCGGCAAGGTGGCCGCCACCAGCGTCATCACAATAGTCAAGTCCAAGACGGAC GCCCGGTCGTAGGGGACGTGCTCAGCCCCGCGGGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATTTTTAAAGCTCCCGGCTTCCTTCTAGGCTGGCCCCTCCCGCATCCTCCTAATCTCTC CCCTGGCCCCCTGGCCCCTTTTCTCGCCTCTGCCTCCCTGACAGCCTTCAGTTCCCCTTC CCCCTCGGACCCTCCTGGCCTCCCACCTGGTTCCTGGGGGCAGGGTGGACAGGGAGCAGC CCGAGCCAAGGCTGAAGGGCGGTTCTCGGGGCCAGGGTGCCTGCTTGCTGCGCCCCCCGG GTTATGACGACCCCCAATAAAGGAAACAAAGCCTTGAAGGTGAAGCGGGAGCCAGGCGAG AATGGCACCAGCCTGACGGACGAGGAGCTGGTGACCATGTCCGTGCGGGAGCTGAACCAG CACCTGCGGGGCCTGTCCAAGGAGGAGATCATCCAGCTGAAGCAGCGCCGGCGCACGCTC AAGAACCGCGGCTACGCCGCCAGCTGCCGCGTGAAGCGGGTGACCCAGAAGGAGGAGCTG GAGAAGCAGAAGGCGGAGCTGCAGCAGGAGGTGGAGAAGCTGGCCTCCGAGAACGCCAGC ATGAAGCTGGAGCTCGACGCCCTGCGCTCCAAGTACGAGGCCCTGCAGAACTTCGCCAGG ACGGTGGCCCGAAGCCCCGTGGCACCGGCGCGGGGCCCCCTTGCTGCCAGCTTGGGGCCC CTCGTCCCCGGCAAGGTGGCCGCCACCAGCGTCATCACAATAGTCAAGTCCAAGACGGAC GCCCGGTCGTAGGGGACGTGCTCAGCCCCGCGGGTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 68-182, - strand, RNAz p=0.986952 | |
| 278-397, - strand, RNAz p=0.813794 | |
| 438-717, + strand, RNAz p=0.967302 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 68-182, - strand, RNAz p=0.986952 | |
| 278-397, - strand, RNAz p=0.813794 | |
| 438-717, + strand, RNAz p=0.967302 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-182, gnl|bosTau2|chr19 (45442632-45442449) | |
| 1-182, gnl|canFam2|chr9 (3372106-3371710) | |
| 1-182, gnl|galGal2|chr3_random (681622-682018) | |
| 1-182, gnl|Hg17|chr17 (77474741-77474561) | |
| 1-182, gnl|hg17|chr17_random (1980618-1981036) | |
| 1-182, gnl|loxAfr1|scaffold_225207 (649-228) | |
| 1-182, gnl|mm7|chr11 (120738984-120739367) | |
| 1-182, gnl|Mm7|chr11 (120739210-120739038) | |
| 1-182, gnl|monDom2|scaffold_18 (14897857-14898258) | |
| 1-182, gnl|rheMac2|chr16 (77353619-77354079) | |
| 1-182, gnl|rn3|chr10 (110035841-110036224) | |
| 278-756, gnl|bosTau2|chr19 (45442111-45441634) | |
| 278-756, gnl|Hg17|chr17 (77474227-77473748) | |
| 278-756, gnl|Mm7|chr11 (120738783-120738303) | |
| 319-483, gnl|bosTau2|chr10 (12417445-12417609) | |
| 319-483, gnl|canFam2|chr8 (7093305-7093519) | |
| 319-483, gnl|danRer3|chrUn (47907802-47908016) | |
| 319-483, gnl|dasNov1|scaffold_39558 (6473-6687) | |
| 319-483, gnl|echTel1|scaffold_215087 (4450-4194) | |
| 319-483, gnl|fr1|chrUn (218287286-218287500) | |
| 319-483, gnl|galGal2|chr20 (4439913-4440127) | |
| 319-483, gnl|hg17|chr14 (23620387-23620601) | |
| 319-483, gnl|Hg17|chr14 (23620599-23620435) | |
| 319-483, gnl|loxAfr1|scaffold_141663 (4-219) | |
| 319-483, gnl|mm7|chr14 (50387525-50387739) | |
| 319-483, gnl|Mm7|chr14 (50387737-50387573) | |
| 319-483, gnl|monDom2|scaffold_12 (25685746-25685532) | |
| 319-483, gnl|oryCun1|scaffold_211218 (36706-36920) | |
| 319-483, gnl|panTro1|chr15 (22521418-22521632) | |
| 319-483, gnl|rheMac2|chr7 (86971040-86971254) | |
| 319-483, gnl|rn3|chr15 (33667648-33667862) | |
| 319-483, gnl|tetNig1|chrUn_random (107562979-107562766) | |
| 319-483, gnl|xenTro1|scaffold_35 (1026606-1026820) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-182, gnl|bosTau2|chr19 (45442632-45442449) | |
| 1-182, gnl|canFam2|chr9 (3372106-3371710) | |
| 1-182, gnl|galGal2|chr3_random (681622-682018) | |
| 1-182, gnl|Hg17|chr17 (77474741-77474561) | |
| 1-182, gnl|hg17|chr17_random (1980618-1981036) | |
| 1-182, gnl|loxAfr1|scaffold_225207 (649-228) | |
| 1-182, gnl|mm7|chr11 (120738984-120739367) | |
| 1-182, gnl|Mm7|chr11 (120739210-120739038) | |
| 1-182, gnl|monDom2|scaffold_18 (14897857-14898258) | |
| 1-182, gnl|rheMac2|chr16 (77353619-77354079) | |
| 1-182, gnl|rn3|chr10 (110035841-110036224) | |
| 278-756, gnl|bosTau2|chr19 (45442111-45441634) | |
| 278-756, gnl|Hg17|chr17 (77474227-77473748) | |
| 278-756, gnl|Mm7|chr11 (120738783-120738303) | |
| 319-483, gnl|bosTau2|chr10 (12417445-12417609) | |
| 319-483, gnl|canFam2|chr8 (7093305-7093519) | |
| 319-483, gnl|danRer3|chrUn (47907802-47908016) | |
| 319-483, gnl|dasNov1|scaffold_39558 (6473-6687) | |
| 319-483, gnl|echTel1|scaffold_215087 (4450-4194) | |
| 319-483, gnl|fr1|chrUn (218287286-218287500) | |
| 319-483, gnl|galGal2|chr20 (4439913-4440127) | |
| 319-483, gnl|hg17|chr14 (23620387-23620601) | |
| 319-483, gnl|Hg17|chr14 (23620599-23620435) | |
| 319-483, gnl|loxAfr1|scaffold_141663 (4-219) | |
| 319-483, gnl|mm7|chr14 (50387525-50387739) | |
| 319-483, gnl|Mm7|chr14 (50387737-50387573) | |
| 319-483, gnl|monDom2|scaffold_12 (25685746-25685532) | |
| 319-483, gnl|oryCun1|scaffold_211218 (36706-36920) | |
| 319-483, gnl|panTro1|chr15 (22521418-22521632) | |
| 319-483, gnl|rheMac2|chr7 (86971040-86971254) | |
| 319-483, gnl|rn3|chr15 (33667648-33667862) | |
| 319-483, gnl|tetNig1|chrUn_random (107562979-107562766) | |
| 319-483, gnl|xenTro1|scaffold_35 (1026606-1026820) |