Non-Coding RNA Search

Ss1.1-Ova1-OVRM10036E10.5

Sequence:


               
               CCCACAATGCACCGCACAATGGCCCGACCGCCGTCACTACCGGGGCCTGAGCGGGCCTGG
CGGAGCCCGAGCGCGGCCCGGCCCGCAGCGCGGGGCCCCGAGCGCGGTGAAGAGATTGTT
TTCTGAAGGCTGCGTTGGAGGCTGTGACAGAACAGAGAGCCCTGTGGAGCTGATGGGGAG
GCTTTCTCAATAACATGGCCCTTCGCCATTAGCCTTGCCATGACCACATTTTTCACCAGC
GTCCCCCCCTGGATTCAAGATGCAAAGCAGGAGGAGGAAGTGGGCTGGAAACTAGTTCCC
AGGCCTCGGGGCCGGGAGGCGGAGAGTCAAGTGAAGTGCCAATGTGAAATATCGGGGACA
CCCTTCTCAAATGGGGAGAAGCTGAGGCCTCACAGCCTCCCCCATCCAGAGCAGAGACCG
TATAGCTGCCCTCAGCTGCACTGTGGCAAGGCTTTTGCCTCCAAGTACAAGCTGTATAGG
CACATGGCCACCCACTCAGCCCAGAAACCCCACCAGTGCATGTACTGTGATAAGATGTTT
CATCGCAAGGACCATCTGCGAAACCACCTGCCAACTCACGACCCCAACTAAGAGGCCCTC
CACTGTTCTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACAATGCACCGCACAATGGCCCGACCGCCGTCACTACCGGGGCCTGAGCGGGCCTGG
CGGAGCCCGAGCGCGGCCCGGCCCGCAGCGCGGGGCCCCGAGCGCGGTGAAGAGATTGTT
TTCTGAAGGCTGCGTTGGAGGCTGTGACAGAACAGAGAGCCCTGTGGAGCTGATGGGGAG
GCTTTCTCAATAACATGGCCCTTCGCCATTAGCCTTGCCATGACCACATTTTTCACCAGC
GTCCCCCCCTGGATTCAAGATGCAAAGCAGGAGGAGGAAGTGGGCTGGAAACTAGTTCCC
AGGCCTCGGGGCCGGGAGGCGGAGAGTCAAGTGAAGTGCCAATGTGAAATATCGGGGACA
CCCTTCTCAAATGGGGAGAAGCTGAGGCCTCACAGCCTCCCCCATCCAGAGCAGAGACCG
TATAGCTGCCCTCAGCTGCACTGTGGCAAGGCTTTTGCCTCCAAGTACAAGCTGTATAGG
CACATGGCCACCCACTCAGCCCAGAAACCCCACCAGTGCATGTACTGTGATAAGATGTTT
CATCGCAAGGACCATCTGCGAAACCACCTGCCAACTCACGACCCCAACTAAGAGGCCCTC
CACTGTTCTGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22902401|gb|AAH37664.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22902401|gb|AAH37664.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               264-480, + strand, RNAz p=0.99104

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               264-480, + strand, RNAz p=0.99104

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002657, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002657, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               106-480, gnl|bosTau2|chr13 (42340522-42340896)
               

               
               106-480, gnl|Hg17|chr20 (30253757-30253382)
               

               
               106-480, gnl|Mm7|chr2 (152977030-152976656)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-480, gnl|bosTau2|chr13 (42340522-42340896)
               

               
               106-480, gnl|Hg17|chr20 (30253757-30253382)
               

               
               106-480, gnl|Mm7|chr2 (152977030-152976656)

	106-480, gnl\|bosTau2\|chr13 (42340522-42340896)
	106-480, gnl\|Hg17\|chr20 (30253757-30253382)
	106-480, gnl\|Mm7\|chr2 (152977030-152976656)