Non-Coding RNA Search

Ss1.1-Ova1-OVRM10038H02.5

Sequence:


               
               AATAAACTGATAATGCAGATGGACAGACAGACGACCACAAACAAGAGAAACGAAGCCACA
GATACTGGCTGAAAGAGACAGTTGCCCCAGGCAGTCAGCGGCATAAAGACGTAGGGGCTC
AGCCCCCAGCTTCCTACCACCCAAATACTGAGGAAAGGGTAAGGGACGTGGGTCACAAGT
CCTGGTTTGAGTCCCCCAAACCCCAGGAAGACTCAGTTTCCTCATCTGTGCAATGGCGAT
GCCCTCTGTCCTGATGGGGTCTGGAAGGACTAAATGATTAAGCATTAGCCAGGATCATCA
TTTTGGATCAAGGCAAGAGCAGTGGGGTAGGTCTCACTGCCCGAGGCCAGCAAGCACTCG
GACCCGTAGTGATTATGCGACTCGTAGTGGCGTCATTCTGCAAATGTTTGTGTTTTGCAG
ATGGGAATGAAGGTGGCAAGATGGGCTCAACAGTTACCGCTGCCGTCATTGGGATCATCG
TGCCCATGGGTGAGTGTGGCCCCGAGTCACTGGGGAGAAAAGAGAGACCCTGCCCGGGGT
CCGGGGTAAAGCCCTAGGATAGAGCGCGCAGCCCATCCATCTCTCTCATTGACGTTTCCT
GCCCCGGCAGCCTTCCTGCTCACCTCCCAGTCCTGACTCCGTTTGGTTTCTTGGCTTGGC
TCCCAAGCCTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAAACTGATAATGCAGATGGACAGACAGACGACCACAAACAAGAGAAACGAAGCCACA
GATACTGGCTGAAAGAGACAGTTGCCCCAGGCAGTCAGCGGCATAAAGACGTAGGGGCTC
AGCCCCCAGCTTCCTACCACCCAAATACTGAGGAAAGGGTAAGGGACGTGGGTCACAAGT
CCTGGTTTGAGTCCCCCAAACCCCAGGAAGACTCAGTTTCCTCATCTGTGCAATGGCGAT
GCCCTCTGTCCTGATGGGGTCTGGAAGGACTAAATGATTAAGCATTAGCCAGGATCATCA
TTTTGGATCAAGGCAAGAGCAGTGGGGTAGGTCTCACTGCCCGAGGCCAGCAAGCACTCG
GACCCGTAGTGATTATGCGACTCGTAGTGGCGTCATTCTGCAAATGTTTGTGTTTTGCAG
ATGGGAATGAAGGTGGCAAGATGGGCTCAACAGTTACCGCTGCCGTCATTGGGATCATCG
TGCCCATGGGTGAGTGTGGCCCCGAGTCACTGGGGAGAAAAGAGAGACCCTGCCCGGGGT
CCGGGGTAAAGCCCTAGGATAGAGCGCGCAGCCCATCCATCTCTCTCATTGACGTTTCCT
GCCCCGGCAGCCTTCCTGCTCACCTCCCAGTCCTGACTCCGTTTGGTTTCTTGGCTTGGC
TCCCAAGCCTCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               189-285, - strand, RNAz p=0.996508

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-285, - strand, RNAz p=0.996508

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               189-665, gnl|bosTau2|chr12 (48366128-48366597)
               

               
               189-665, gnl|Hg17|chr1 (53433112-53432640)
               

               
               189-665, gnl|Mm7|chr4 (107240239-107240639)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-665, gnl|bosTau2|chr12 (48366128-48366597)
               

               
               189-665, gnl|Hg17|chr1 (53433112-53432640)
               

               
               189-665, gnl|Mm7|chr4 (107240239-107240639)

	189-665, gnl\|bosTau2\|chr12 (48366128-48366597)
	189-665, gnl\|Hg17\|chr1 (53433112-53432640)
	189-665, gnl\|Mm7\|chr4 (107240239-107240639)