Non-Coding RNA Search

Ss1.1-Ova1-OVRM10040H03.5

Sequence:


               
               TGGAAGCATTAAATGTGGGACCGCCAGAAGCGCTTGTAAACAGAGAGCCGGGCCGGGATG
GTCGGTGGCCAAGCCGGCTTGTCACCGTGAGGAAGGCGGGCGGGCTGCCGAAGCCAAGCC
CCAGCCAGGAGTAGGCTGCGGGCCACGCAGGTGAAGAGAGAGAAGCGGCCGGCGGCTGGA
AAATCGAAGATGGCCGTGGCATTGCTTTGACAAGCACTTCCTGTTGTCTTTACAGAGGAC
TCACTGAAGAATAATCTCAAAGGAATGTCTGTGTCCCATTACCTTTGCCGATGACTGTTA
CCATCTAGCAAATGCTTTTAATGTCCCAGAAAACATCAGCCACCCTAGTGCTTGGCCTGC
TCTGAGCAGCCGAATGAAAGTTCCTTCCAGTTATTTCCAGAACTCTGTTGCCCAAAGCAC
TTCTCTTCCTTGGGTGAATGTTCATGAAGCCCTTTCCTGAACCAGCGTAGGAGGCTTAGG
CCTCTTGGAGCCCGTGACATGGAAGCTTTGGAAGTGGATGATATCAGCCCGGCCTTGGAA
GTTACTGAGGAATTCTTTAGCACTTTCGACAGTAAGCTAGAAAAGGCTGTGCAGCACGCG
GAGGTTTATGGGATTCAGGAGGTCCCGGAACTGGTGGGGCATGAGGTACTCGGTAACATA
GACAATGGTGCTATCAGAAATGTCTCCTCCCTAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAGCATTAAATGTGGGACCGCCAGAAGCGCTTGTAAACAGAGAGCCGGGCCGGGATG
GTCGGTGGCCAAGCCGGCTTGTCACCGTGAGGAAGGCGGGCGGGCTGCCGAAGCCAAGCC
CCAGCCAGGAGTAGGCTGCGGGCCACGCAGGTGAAGAGAGAGAAGCGGCCGGCGGCTGGA
AAATCGAAGATGGCCGTGGCATTGCTTTGACAAGCACTTCCTGTTGTCTTTACAGAGGAC
TCACTGAAGAATAATCTCAAAGGAATGTCTGTGTCCCATTACCTTTGCCGATGACTGTTA
CCATCTAGCAAATGCTTTTAATGTCCCAGAAAACATCAGCCACCCTAGTGCTTGGCCTGC
TCTGAGCAGCCGAATGAAAGTTCCTTCCAGTTATTTCCAGAACTCTGTTGCCCAAAGCAC
TTCTCTTCCTTGGGTGAATGTTCATGAAGCCCTTTCCTGAACCAGCGTAGGAGGCTTAGG
CCTCTTGGAGCCCGTGACATGGAAGCTTTGGAAGTGGATGATATCAGCCCGGCCTTGGAA
GTTACTGAGGAATTCTTTAGCACTTTCGACAGTAAGCTAGAAAAGGCTGTGCAGCACGCG
GAGGTTTATGGGATTCAGGAGGTCCCGGAACTGGTGGGGCATGAGGTACTCGGTAACATA
GACAATGGTGCTATCAGAAATGTCTCCTCCCTAGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               539-658, + strand, RNAz p=0.875528

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               539-658, + strand, RNAz p=0.875528

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               2-176, gnl|bosTau2|chr2 (61842260-61842430)
               

               
               2-176, gnl|dasNov1|scaffold_220 (39994-39347)
               

               
               2-176, gnl|echTel1|scaffold_31241 (708-1288)
               

               
               2-176, gnl|hg17|chr2 (208715533-208716176)
               

               
               2-176, gnl|Hg17|chr2 (208715793-208715622)
               

               
               2-176, gnl|loxAfr1|scaffold_42255 (826-1438)
               

               
               2-176, gnl|mm7|chr1 (65198519-65199066)
               

               
               2-176, gnl|Mm7|chr1 (65198748-65198583)
               

               
               2-176, gnl|oryCun1|scaffold_180091 (2319-2943)
               

               
               2-176, gnl|panTro1|chr13 (98777918-98778560)
               

               
               2-176, gnl|rheMac2|chr12 (71917881-71918534)
               

               
               2-176, gnl|rn3|chr9 (63742829-63743357)
               


               
               181-695, gnl|bosTau2|chr2 (61871646-61872157)
               

               
               181-695, gnl|Hg17|chr2 (208692186-208691670)
               

               
               181-695, gnl|Mm7|chr1 (65180563-65180135)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-176, gnl|bosTau2|chr2 (61842260-61842430)
               

               
               2-176, gnl|dasNov1|scaffold_220 (39994-39347)
               

               
               2-176, gnl|echTel1|scaffold_31241 (708-1288)
               

               
               2-176, gnl|hg17|chr2 (208715533-208716176)
               

               
               2-176, gnl|Hg17|chr2 (208715793-208715622)
               

               
               2-176, gnl|loxAfr1|scaffold_42255 (826-1438)
               

               
               2-176, gnl|mm7|chr1 (65198519-65199066)
               

               
               2-176, gnl|Mm7|chr1 (65198748-65198583)
               

               
               2-176, gnl|oryCun1|scaffold_180091 (2319-2943)
               

               
               2-176, gnl|panTro1|chr13 (98777918-98778560)
               

               
               2-176, gnl|rheMac2|chr12 (71917881-71918534)
               

               
               2-176, gnl|rn3|chr9 (63742829-63743357)
               


               
               181-695, gnl|bosTau2|chr2 (61871646-61872157)
               

               
               181-695, gnl|Hg17|chr2 (208692186-208691670)
               

               
               181-695, gnl|Mm7|chr1 (65180563-65180135)

	2-176, gnl\|bosTau2\|chr2 (61842260-61842430)
	2-176, gnl\|dasNov1\|scaffold_220 (39994-39347)
	2-176, gnl\|echTel1\|scaffold_31241 (708-1288)
	2-176, gnl\|hg17\|chr2 (208715533-208716176)
	2-176, gnl\|Hg17\|chr2 (208715793-208715622)
	2-176, gnl\|loxAfr1\|scaffold_42255 (826-1438)
	2-176, gnl\|mm7\|chr1 (65198519-65199066)
	2-176, gnl\|Mm7\|chr1 (65198748-65198583)
	2-176, gnl\|oryCun1\|scaffold_180091 (2319-2943)
	2-176, gnl\|panTro1\|chr13 (98777918-98778560)
	2-176, gnl\|rheMac2\|chr12 (71917881-71918534)
	2-176, gnl\|rn3\|chr9 (63742829-63743357)

	181-695, gnl\|bosTau2\|chr2 (61871646-61872157)
	181-695, gnl\|Hg17\|chr2 (208692186-208691670)
	181-695, gnl\|Mm7\|chr1 (65180563-65180135)