Non-Coding RNA Search

Ss1.1-Ova1-OVRM10042F11.5

Sequence:


               
               TTTTATGAGAGGCGTCACTGCTCTGGGAGCTGTGACTGCCGCCACCACGACAACCAGCGC
CGTCCCGCGGGGGGTGGCGCTGCTCCTTCAGGTACGGCCCTGGGCGGGTTTGGACACCGG
GAGGGGAGTCGGGCCGACTGTCGGGGTCTTGGCCAGCACCCGTGGTTCATCCGCCTGGCG
GAGGCAGTCGTGGGGTCTCGCTGAGGCAAGTTCTTGACCCTAGGTGTTTAGCGTTTGCGG
CTGCCGGGGTGGCCTCTTTCGCACGCGAGTCTGCAGCCTCCGCGGCAGAGCTGATCCCCG
AGGCGTCTGTTGCGGTGGTCCTGCAGCCTTGAATCTCTCCGTGCAGACGCGAGCAGTGCG
CGGGGGTGTGGGGGAGCTGACGGCCGGGGGATGCACCCGCCTTCCGTCCCTGGGCTGGCT
TAAGGCGCTTCTTGGTCCTGATTGATGAGAGTCCATATGGTGAGATGTTATGTGCGTCAC
CCTGCCGGCTTTTCAACCGGCCCATCTTTTTTGGTGACGTTTGAGTCCCGTGATACCAGG
ATACAGAAAGATTAAATAATGTATTTGAGATTTCTGTTTGTGCGCCAGGCTAATAATGGT
CAAATACCTCTGCCTATCCTATTTCCCCCCCACGGATCACTTTTAGTGTGGACCTTCCTA
ATCGTTAAGTCCTCCGTAACAGTAGTCCGCACAGTGCTTTGTACGAATTACATTTTTATC
TTTGTTTAAGGAACCCAACTTTTTGCCATTGGGAGCGCCAGTTTTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTATGAGAGGCGTCACTGCTCTGGGAGCTGTGACTGCCGCCACCACGACAACCAGCGC
CGTCCCGCGGGGGGTGGCGCTGCTCCTTCAGGTACGGCCCTGGGCGGGTTTGGACACCGG
GAGGGGAGTCGGGCCGACTGTCGGGGTCTTGGCCAGCACCCGTGGTTCATCCGCCTGGCG
GAGGCAGTCGTGGGGTCTCGCTGAGGCAAGTTCTTGACCCTAGGTGTTTAGCGTTTGCGG
CTGCCGGGGTGGCCTCTTTCGCACGCGAGTCTGCAGCCTCCGCGGCAGAGCTGATCCCCG
AGGCGTCTGTTGCGGTGGTCCTGCAGCCTTGAATCTCTCCGTGCAGACGCGAGCAGTGCG
CGGGGGTGTGGGGGAGCTGACGGCCGGGGGATGCACCCGCCTTCCGTCCCTGGGCTGGCT
TAAGGCGCTTCTTGGTCCTGATTGATGAGAGTCCATATGGTGAGATGTTATGTGCGTCAC
CCTGCCGGCTTTTCAACCGGCCCATCTTTTTTGGTGACGTTTGAGTCCCGTGATACCAGG
ATACAGAAAGATTAAATAATGTATTTGAGATTTCTGTTTGTGCGCCAGGCTAATAATGGT
CAAATACCTCTGCCTATCCTATTTCCCCCCCACGGATCACTTTTAGTGTGGACCTTCCTA
ATCGTTAAGTCCTCCGTAACAGTAGTCCGCACAGTGCTTTGTACGAATTACATTTTTATC
TTTGTTTAAGGAACCCAACTTTTTGCCATTGGGAGCGCCAGTTTTAAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-120, - strand, RNAz p=0.715458
               

               
               468-580, - strand, RNAz p=0.890548

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.715458
               

               
               468-580, - strand, RNAz p=0.890548

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               62-145, + strand, RNAmicro p=0.918192

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               62-145, + strand, RNAmicro p=0.918192

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-768, gnl|bosTau2|chr10 (38775257-38774516)
               

               
               1-768, gnl|canFam2|chr30 (23784839-23785525)
               

               
               1-768, gnl|dasNov1|scaffold_6558 (85065-85758)
               

               
               1-768, gnl|echTel1|scaffold_319608 (94986-95660)
               

               
               1-768, gnl|hg17|chr15 (53486877-53487528)
               

               
               1-768, gnl|Hg17|chr15 (53487800-53487053)
               

               
               1-768, gnl|loxAfr1|scaffold_72441 (8215-7510)
               

               
               1-768, gnl|mm7|chr9 (73018856-73018296)
               

               
               1-768, gnl|oryCun1|scaffold_168091 (5699-6387)
               

               
               1-768, gnl|panTro1|chr16 (53827596-53828247)
               

               
               1-768, gnl|rheMac2|chr7 (33752725-33753370)
               

               
               1-768, gnl|rn3|chr8 (77744189-77743590)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr10 (38775257-38774516)
               

               
               1-768, gnl|canFam2|chr30 (23784839-23785525)
               

               
               1-768, gnl|dasNov1|scaffold_6558 (85065-85758)
               

               
               1-768, gnl|echTel1|scaffold_319608 (94986-95660)
               

               
               1-768, gnl|hg17|chr15 (53486877-53487528)
               

               
               1-768, gnl|Hg17|chr15 (53487800-53487053)
               

               
               1-768, gnl|loxAfr1|scaffold_72441 (8215-7510)
               

               
               1-768, gnl|mm7|chr9 (73018856-73018296)
               

               
               1-768, gnl|oryCun1|scaffold_168091 (5699-6387)
               

               
               1-768, gnl|panTro1|chr16 (53827596-53828247)
               

               
               1-768, gnl|rheMac2|chr7 (33752725-33753370)
               

               
               1-768, gnl|rn3|chr8 (77744189-77743590)

	1-120, - strand, RNAz p=0.715458
	468-580, - strand, RNAz p=0.890548

	1-768, gnl\|bosTau2\|chr10 (38775257-38774516)
	1-768, gnl\|canFam2\|chr30 (23784839-23785525)
	1-768, gnl\|dasNov1\|scaffold_6558 (85065-85758)
	1-768, gnl\|echTel1\|scaffold_319608 (94986-95660)
	1-768, gnl\|hg17\|chr15 (53486877-53487528)
	1-768, gnl\|Hg17\|chr15 (53487800-53487053)
	1-768, gnl\|loxAfr1\|scaffold_72441 (8215-7510)
	1-768, gnl\|mm7\|chr9 (73018856-73018296)
	1-768, gnl\|oryCun1\|scaffold_168091 (5699-6387)
	1-768, gnl\|panTro1\|chr16 (53827596-53828247)
	1-768, gnl\|rheMac2\|chr7 (33752725-33753370)
	1-768, gnl\|rn3\|chr8 (77744189-77743590)