Non-Coding RNA Search

Ss1.1-Ova1-OVRM10044G04.5

Sequence:


               
               AATACTTGTGGCCTGCCTCTCTCTGAGGCTTCTCTAAGAAGGCGGCCTGACCCTGAGGGG
GCCACCCTGTGTGTGATTCTGAGGGTCCTTGCTGGGGTCCTAACTTGGCAGGGAGGAGGG
TGGACGGGGGATGGACAGACAGGCAGGATTTCGCGCCCGCCCCTCCGGATCTCAGCCTGC
TTTGTGTCTGGGGCACACACAGGGCCCCATTCACGGGTCTGCTGGTTCTCATTACTGCTG
CCGGCGCTCGACCCTCCTCCCAGCACTTCCCCTGCCTCTGCTCTGAGGCCCCCTGGGGAG
GGTCTGGGGCGCCTGCTTTCAAGCCCCAGCTGAAGGAGGAATGAAGGGCTTTTCACAAAG
TTAAAAACAGGGCTCGCAATGGTGCCAACCACCAGGCTGGGGTTTGGGCCGAGAAGCCCC
TCTCCGACTTCATTCCCAGCTCCAAGGCTCCCCAAAGCCCAAAGGAGCCACCCAGCTCTT
GGCTTGCCTGGCAGCTGACGCACCACAACTCAGACTGGGTCTCAGACTGCGGGGGTGGGA
GGAGAGGGAGAAAATACGAAATTGTCATCCCCACCCCCACCTCACCCCGGCCATTTTGAG
GCACAGTTCTGGCCACTCGGCTCCCTTGAGGAACGCCTGGCCCTGCCCTCCTTTTGCATC
CCAGCCTTGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATACTTGTGGCCTGCCTCTCTCTGAGGCTTCTCTAAGAAGGCGGCCTGACCCTGAGGGG
GCCACCCTGTGTGTGATTCTGAGGGTCCTTGCTGGGGTCCTAACTTGGCAGGGAGGAGGG
TGGACGGGGGATGGACAGACAGGCAGGATTTCGCGCCCGCCCCTCCGGATCTCAGCCTGC
TTTGTGTCTGGGGCACACACAGGGCCCCATTCACGGGTCTGCTGGTTCTCATTACTGCTG
CCGGCGCTCGACCCTCCTCCCAGCACTTCCCCTGCCTCTGCTCTGAGGCCCCCTGGGGAG
GGTCTGGGGCGCCTGCTTTCAAGCCCCAGCTGAAGGAGGAATGAAGGGCTTTTCACAAAG
TTAAAAACAGGGCTCGCAATGGTGCCAACCACCAGGCTGGGGTTTGGGCCGAGAAGCCCC
TCTCCGACTTCATTCCCAGCTCCAAGGCTCCCCAAAGCCCAAAGGAGCCACCCAGCTCTT
GGCTTGCCTGGCAGCTGACGCACCACAACTCAGACTGGGTCTCAGACTGCGGGGGTGGGA
GGAGAGGGAGAAAATACGAAATTGTCATCCCCACCCCCACCTCACCCCGGCCATTTTGAG
GCACAGTTCTGGCCACTCGGCTCCCTTGAGGAACGCCTGGCCCTGCCCTCCTTTTGCATC
CCAGCCTTGTCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-117, - strand, RNAz p=0.995863
               

               
               198-593, + strand, RNAz p=0.999904

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-117, - strand, RNAz p=0.995863
               

               
               198-593, + strand, RNAz p=0.999904

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               568-664, - strand, RNAmicro p=0.984766

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               568-664, - strand, RNAmicro p=0.984766

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-669, gnl|bosTau2|chr7 (9918342-9917680)
               

               
               5-669, gnl|Hg17|chr19 (10788845-10788131)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-669, gnl|bosTau2|chr7 (9918342-9917680)
               

               
               5-669, gnl|Hg17|chr19 (10788845-10788131)

	5-117, - strand, RNAz p=0.995863
	198-593, + strand, RNAz p=0.999904

	5-669, gnl\|bosTau2\|chr7 (9918342-9917680)
	5-669, gnl\|Hg17\|chr19 (10788845-10788131)