Non-Coding RNA Search

Ss1.1-Ova1-OVRM10049G07.5

Sequence:


               
               ATACGGTGCCCTTAGAAAGGGATAACTCAGAAGAATTTTTAAAACGAGAAGCACGGGCAA
ACCAGTTAGCAGAAGAAATTGAATCAAGTGCCCAGTATAAAGCCCGGGTGGCCCTGGAAA
ATGATGATAGGAGTGAAGAAGAAAAGTACACTGCAGTTCAGAGAAATTCCAGTGAACGTG
AGGGCCACAGCATAAACACTAGGGAAAATAAATATATTCCTCCTGGACAAAGAAATAGAG
AAGTCATATCGTGGGGAAGTGGGCGACAGAATTCACCGCGTATGGGCCAGCCTGGGTCAG
GCTCCATGCCGTCAAGATCCACCTCTCACACTTCAGATTTCAACCCGAATTCTGGTTCAG
ACCAAAGAGTAGTTAATGGAGGTGTTCCCTGGCCATCGCCTTGCCCATCTCCTTCCTCTC
GCCCACCTTCTCGCTACCAGTCAGGTCCCAACTCTCTTCCACCTCGGGCAGCCACCCCTA
CACGGCCGCCCTCCAGGCCCCCCTCGCGGCCATCCAGACCCCCGTCTCACCCCTCTGCTC
ATGGTTCTCCAGCTCCTGTCTCTACTATGCCTAAACGCATGTCTTCAGAAGGGCCTCCTA
GGATGTCCCCAAAGGCCCAACGACACCCTCGAAATCACAGAGTTTCTGCTGGGCGGGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACGGTGCCCTTAGAAAGGGATAACTCAGAAGAATTTTTAAAACGAGAAGCACGGGCAA
ACCAGTTAGCAGAAGAAATTGAATCAAGTGCCCAGTATAAAGCCCGGGTGGCCCTGGAAA
ATGATGATAGGAGTGAAGAAGAAAAGTACACTGCAGTTCAGAGAAATTCCAGTGAACGTG
AGGGCCACAGCATAAACACTAGGGAAAATAAATATATTCCTCCTGGACAAAGAAATAGAG
AAGTCATATCGTGGGGAAGTGGGCGACAGAATTCACCGCGTATGGGCCAGCCTGGGTCAG
GCTCCATGCCGTCAAGATCCACCTCTCACACTTCAGATTTCAACCCGAATTCTGGTTCAG
ACCAAAGAGTAGTTAATGGAGGTGTTCCCTGGCCATCGCCTTGCCCATCTCCTTCCTCTC
GCCCACCTTCTCGCTACCAGTCAGGTCCCAACTCTCTTCCACCTCGGGCAGCCACCCCTA
CACGGCCGCCCTCCAGGCCCCCCTCGCGGCCATCCAGACCCCCGTCTCACCCCTCTGCTC
ATGGTTCTCCAGCTCCTGTCTCTACTATGCCTAAACGCATGTCTTCAGAAGGGCCTCCTA
GGATGTCCCCAAAGGCCCAACGACACCCTCGAAATCACAGAGTTTCTGCTGGGCGGGGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61812061|ref|XP_614445.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61812061|ref|XP_614445.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               86-578, - strand, RNAz p=0.644632

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-578, - strand, RNAz p=0.644632

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-203, gnl|bosTau2|chr17 (29344447-29344645)
               

               
               5-203, gnl|Hg17|chr12 (110420600-110420402)
               

               
               5-203, gnl|Mm7|chr5 (121012170-121012368)
               


               
               380-592, gnl|bosTau2|chr17 (29348121-29348333)
               

               
               380-592, gnl|Hg17|chr12 (110416889-110416677)
               

               
               380-592, gnl|Mm7|chr5 (121015593-121015805)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-203, gnl|bosTau2|chr17 (29344447-29344645)
               

               
               5-203, gnl|Hg17|chr12 (110420600-110420402)
               

               
               5-203, gnl|Mm7|chr5 (121012170-121012368)
               


               
               380-592, gnl|bosTau2|chr17 (29348121-29348333)
               

               
               380-592, gnl|Hg17|chr12 (110416889-110416677)
               

               
               380-592, gnl|Mm7|chr5 (121015593-121015805)

	5-203, gnl\|bosTau2\|chr17 (29344447-29344645)
	5-203, gnl\|Hg17\|chr12 (110420600-110420402)
	5-203, gnl\|Mm7\|chr5 (121012170-121012368)

	380-592, gnl\|bosTau2\|chr17 (29348121-29348333)
	380-592, gnl\|Hg17\|chr12 (110416889-110416677)
	380-592, gnl\|Mm7\|chr5 (121015593-121015805)