Non-Coding RNA Search

Ss1.1-Ova1-OVRM10055E08.5

Sequence:


               
               CTGGGATTTAAGAAGGGAAAAAACAAGATAACTACAGATGTTGTTTCTTTTTCTTATTTA
GAGATATCTTCTAATAAAGGCTATTAACTTTGAAATTTATGTTGTCTTTCCAAGACTAAG
AAAAACAGACTTTTTTTGGACTACAGGTTATGGTTATGTGTCTGGTACTGTGCCAGTTTC
CTTCACATGTTTCTGTTTAATTCTTGAAATAGCCTGCAAAGTAGGTATTTTTCCCATCCT
ACAGATGAGGAAATTGGCAGAGTCAGAATTCTGTACAGTTATGAATATTTGTGTATGTAT
ATGTATATGTATGTGTGTATACATATATATGTTTACACAGACTCCATATTGAAAGGTTTG
AAAACATCAATGTTTAAATATCATAATGGCAATCTCAAGGGAATAAAGAAAAATAAAGTT
TTGGGGAAATACTGAAGTTTTTCAATATTTATTATATCGTCAGATAAATTTGTTTGAATG
GACAATAGTAGAAGTCATGGTTTTATAATGTAATCTCATTTTTTCCCTCCTTGAATTTGT
CACTGCTGATATATTGTGGTTTTGAATTTGACATGTGACAAGTATATTTTACTAATTTAT
TAGAGGAATGCCATTACGGGATTTTGCCTGTTATCTCAGAACATAGATCCAAAGAGAGTA
TGTGTTGTTTTTTGGGGGAATGAGAATTTTGCATTTGGTAGTATTGAATAGTTGAAGTGG
CGTTTCTTCCCTTTACACATGAGAGTATATATTTTTCTGTTCTCCTTTCCTCTTTCTTTA
AGATGAGATTTAGATCTGAGGTCTTTTGAAAATCCACTTGAGGTAAGTCATGAAGGACTT
GACTTTTTCTTCAGCAAGAGGTGGCAATCTTAGCACATTTACTTCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGATTTAAGAAGGGAAAAAACAAGATAACTACAGATGTTGTTTCTTTTTCTTATTTA
GAGATATCTTCTAATAAAGGCTATTAACTTTGAAATTTATGTTGTCTTTCCAAGACTAAG
AAAAACAGACTTTTTTTGGACTACAGGTTATGGTTATGTGTCTGGTACTGTGCCAGTTTC
CTTCACATGTTTCTGTTTAATTCTTGAAATAGCCTGCAAAGTAGGTATTTTTCCCATCCT
ACAGATGAGGAAATTGGCAGAGTCAGAATTCTGTACAGTTATGAATATTTGTGTATGTAT
ATGTATATGTATGTGTGTATACATATATATGTTTACACAGACTCCATATTGAAAGGTTTG
AAAACATCAATGTTTAAATATCATAATGGCAATCTCAAGGGAATAAAGAAAAATAAAGTT
TTGGGGAAATACTGAAGTTTTTCAATATTTATTATATCGTCAGATAAATTTGTTTGAATG
GACAATAGTAGAAGTCATGGTTTTATAATGTAATCTCATTTTTTCCCTCCTTGAATTTGT
CACTGCTGATATATTGTGGTTTTGAATTTGACATGTGACAAGTATATTTTACTAATTTAT
TAGAGGAATGCCATTACGGGATTTTGCCTGTTATCTCAGAACATAGATCCAAAGAGAGTA
TGTGTTGTTTTTTGGGGGAATGAGAATTTTGCATTTGGTAGTATTGAATAGTTGAAGTGG
CGTTTCTTCCCTTTACACATGAGAGTATATATTTTTCTGTTCTCCTTTCCTCTTTCTTTA
AGATGAGATTTAGATCTGAGGTCTTTTGAAAATCCACTTGAGGTAAGTCATGAAGGACTT
GACTTTTTCTTCAGCAAGAGGTGGCAATCTTAGCACATTTACTTCCTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               298-398, + strand, RNAz p=0.630383

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-398, + strand, RNAz p=0.630383

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               298-885, gnl|bosTau2|chr4 (34730171-34730760)
               

               
               298-885, gnl|Hg17|chr7 (33047572-33048204)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               298-885, gnl|bosTau2|chr4 (34730171-34730760)
               

               
               298-885, gnl|Hg17|chr7 (33047572-33048204)

	298-885, gnl\|bosTau2\|chr4 (34730171-34730760)
	298-885, gnl\|Hg17\|chr7 (33047572-33048204)