Non-Coding RNA Search

Ss1.1-Ova1-OVRM10057F12.5

Sequence:


               
               AACTTGCTGCATATATTCTTTAAAGCCTTTTATCTCTTTTTGCCTTGATTATTCATTTAC
TAAGAACTCCTCAAGGCTTTTTAGTTCATAATTTTATCCCACATAATAAAAGGTAAAGGC
CTCTGTAGTGTAGAAGAACGCGGGGTTTTGTGTATTAAAACTAGGTTTAGTCCTCAGCTC
TGCCAGCTCTTGCTGTGTGCAGTGGAAAATTTAACATTGAGATTTAATTTTCTCATCTAC
CCTTGGGGACAGTGTCTCACTTTCAGAATTGTGTACACTGGAAGTACATTCTCCTAAATT
TAATACTTGGTACAAAGCACAGAGATGGCATAAAAGTAGTGCTAATTATTTTTATTAGCA
ACTATTCTGATATTGCTTAAGTTTGGAGGTTTTCCATTTATGTGTGTGTAGCGAGGTAAG
TTCGGAGATAATATCAGCAAATCCATCTGTGTCTTAAAGTTTTACAAATACAGAATAGGA
ATTAACTACTTCTGTGTGGGTTTTCCCACACCACAACCAGTTGTCCAATTCTGTGACACT
GAGTATCCAGCAATTAAATTCAGTTCAGACATTATCTACCTGATGTTAGCGTCAGATCCT
TAAGTTAAAAGGCTCAGTTCCATAAGACTGTCCCCAATGTTGACATCAGTTGTAACACTG
CTCTATATTATATACGAATGTTGTTAAGAGAGTAAATCCTGAGTTCTCGTCACAAGAGAA
AAATTATTTTCTTCTAGTTCTTTAATTTTGTACCTATGTGAGATGATGAATTTTCACTAA
ACTTATTGTGATAATCACTTCATGATTATGCAAGTCATTATGCATATTATGCCTTAGTCC
AATCCATGAACATGGTATATCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTGCTGCATATATTCTTTAAAGCCTTTTATCTCTTTTTGCCTTGATTATTCATTTAC
TAAGAACTCCTCAAGGCTTTTTAGTTCATAATTTTATCCCACATAATAAAAGGTAAAGGC
CTCTGTAGTGTAGAAGAACGCGGGGTTTTGTGTATTAAAACTAGGTTTAGTCCTCAGCTC
TGCCAGCTCTTGCTGTGTGCAGTGGAAAATTTAACATTGAGATTTAATTTTCTCATCTAC
CCTTGGGGACAGTGTCTCACTTTCAGAATTGTGTACACTGGAAGTACATTCTCCTAAATT
TAATACTTGGTACAAAGCACAGAGATGGCATAAAAGTAGTGCTAATTATTTTTATTAGCA
ACTATTCTGATATTGCTTAAGTTTGGAGGTTTTCCATTTATGTGTGTGTAGCGAGGTAAG
TTCGGAGATAATATCAGCAAATCCATCTGTGTCTTAAAGTTTTACAAATACAGAATAGGA
ATTAACTACTTCTGTGTGGGTTTTCCCACACCACAACCAGTTGTCCAATTCTGTGACACT
GAGTATCCAGCAATTAAATTCAGTTCAGACATTATCTACCTGATGTTAGCGTCAGATCCT
TAAGTTAAAAGGCTCAGTTCCATAAGACTGTCCCCAATGTTGACATCAGTTGTAACACTG
CTCTATATTATATACGAATGTTGTTAAGAGAGTAAATCCTGAGTTCTCGTCACAAGAGAA
AAATTATTTTCTTCTAGTTCTTTAATTTTGTACCTATGTGAGATGATGAATTTTCACTAA
ACTTATTGTGATAATCACTTCATGATTATGCAAGTCATTATGCATATTATGCCTTAGTCC
AATCCATGAACATGGTATATCTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               122-241, + strand, RNAz p=0.802715

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-241, + strand, RNAz p=0.802715

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               120-205, + strand, RNAmicro p=0.923901

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               120-205, + strand, RNAmicro p=0.923901

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               83-655, gnl|bosTau2|chr22 (45491537-45492094)
               

               
               83-655, gnl|Hg17|chr3 (131071595-131071036)
               

               
               83-655, gnl|Mm7|chr6 (116203697-116203170)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-655, gnl|bosTau2|chr22 (45491537-45492094)
               

               
               83-655, gnl|Hg17|chr3 (131071595-131071036)
               

               
               83-655, gnl|Mm7|chr6 (116203697-116203170)

	83-655, gnl\|bosTau2\|chr22 (45491537-45492094)
	83-655, gnl\|Hg17\|chr3 (131071595-131071036)
	83-655, gnl\|Mm7\|chr6 (116203697-116203170)