Non-Coding RNA Search

Ss1.1-Ova1-OVRM10060B06.5

Sequence:


               
               CAAATGCTGCCCGCACCCCCTATGGCCATCTACTCAGGTCCGCATCCAGCCTTTCCATCA
AGTCTCAACTACGTGCTTCCTCCTCCAGCATGCCCTCCTGGATTTCTCCTGCCCCATGCC
CAGGTCGATGAGTCCATCTGTCTCCTGGGAAGATGCCGCAAGCTCTCTGCTTTCTAGCTG
GACATTGATGGGGGTAGGGGGGGATAGGTGCACAGGAGAGGCCTCTCCCAACCTCAGCCT
CTCTCAACTTCAGCCTCCCCCCTCGTGCCCTGCACATTCAGCACGCATCGCTACCTCCCC
CCAGCAGTTCCGATCACACCAACATCTGGAGAACGGGCCGCCAGGTCTGTCTGCGGCTCG
GGGTGGGGATTTGCATGTGAGTACAAATATATATGCACACCCTGGGCCTTCCGCCTCCGC
ATTCCTTGGCTGGCCCTTCACACCTGGGCCTGAGACAGGTCAACGCTGAGTGGCTGGATT
TGCATGCGCGTGTATTTCTGGGTAGGGAGTCAGCTGGGGGAGTCTGAGAGGAAGTTGTTG
AGGGAAGCTGGGGGAGTTCAGATGTGTCCCTCTTGGCCTGCTCCATTCACCAAACCAAAT
AATTCCCAGTTGCTCCTGTGTCTAATCCTAGGGGCTTCCAGTCTCAGGGGGAGAGAGAGG
TGGATATACAAACCCTCTAGCCCCACAGGGTCAGAACTGGAGGGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAATGCTGCCCGCACCCCCTATGGCCATCTACTCAGGTCCGCATCCAGCCTTTCCATCA
AGTCTCAACTACGTGCTTCCTCCTCCAGCATGCCCTCCTGGATTTCTCCTGCCCCATGCC
CAGGTCGATGAGTCCATCTGTCTCCTGGGAAGATGCCGCAAGCTCTCTGCTTTCTAGCTG
GACATTGATGGGGGTAGGGGGGGATAGGTGCACAGGAGAGGCCTCTCCCAACCTCAGCCT
CTCTCAACTTCAGCCTCCCCCCTCGTGCCCTGCACATTCAGCACGCATCGCTACCTCCCC
CCAGCAGTTCCGATCACACCAACATCTGGAGAACGGGCCGCCAGGTCTGTCTGCGGCTCG
GGGTGGGGATTTGCATGTGAGTACAAATATATATGCACACCCTGGGCCTTCCGCCTCCGC
ATTCCTTGGCTGGCCCTTCACACCTGGGCCTGAGACAGGTCAACGCTGAGTGGCTGGATT
TGCATGCGCGTGTATTTCTGGGTAGGGAGTCAGCTGGGGGAGTCTGAGAGGAAGTTGTTG
AGGGAAGCTGGGGGAGTTCAGATGTGTCCCTCTTGGCCTGCTCCATTCACCAAACCAAAT
AATTCCCAGTTGCTCCTGTGTCTAATCCTAGGGGCTTCCAGTCTCAGGGGGAGAGAGAGG
TGGATATACAAACCCTCTAGCCCCACAGGGTCAGAACTGGAGGGGAAG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               189-292, - strand, RNAz p=0.566513
               

               
               327-445, - strand, RNAz p=0.896015
               

               
               596-708, - strand, RNAz p=0.998017

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-292, - strand, RNAz p=0.566513
               

               
               327-445, - strand, RNAz p=0.896015
               

               
               596-708, - strand, RNAz p=0.998017

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               669-763, - strand, RNAmicro p=0.996385
               

               
               670-771, + strand, RNAmicro p=0.96634

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               669-763, - strand, RNAmicro p=0.996385
               

               
               670-771, + strand, RNAmicro p=0.96634

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               14-708, gnl|bosTau2|chr7 (2601304-2600579)
               

               
               14-708, gnl|Hg17|chr19 (19127890-19127197)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-708, gnl|bosTau2|chr7 (2601304-2600579)
               

               
               14-708, gnl|Hg17|chr19 (19127890-19127197)

	189-292, - strand, RNAz p=0.566513
	327-445, - strand, RNAz p=0.896015
	596-708, - strand, RNAz p=0.998017

	669-763, - strand, RNAmicro p=0.996385
	670-771, + strand, RNAmicro p=0.96634

	14-708, gnl\|bosTau2\|chr7 (2601304-2600579)
	14-708, gnl\|Hg17\|chr19 (19127890-19127197)