Non-Coding RNA Search

Ss1.1-Ova1-OVRM10061F07.5

Sequence:


               
               GGGTTGGCGCCGGAGCGGTCCGGCCGTCGGGGGCTGACGCCGAGCGCTCTGCCCGCCGTC
TCCGCGGCGCGTCGGCCCCGGTGCGTGGCCGCCCGGGAGCGTCGGCCGGGCGGACCGGCA
TCAAGCTGAGACCATGTCCCTGTACGATGACCTGGGGGTGGAGACCAGCGACTCAAAGAC
GGAAGGCTGGTCCAAGAACTTCAAGCTCCTGCAGTCGCAGCTGCAGGTGAAGAAGGCAGC
CCTCACGCAGGCCAAGAGCCAGAGGACAAAACAGAGCACAGTCCTTGCCCCGGTCATCGA
TCTGAAGCGGGGCGGCTCCTCGGACGAGCGCCAGGTAGTGGACACCCCGCCGCACGTGGC
CGCCGGCCTCAAGGACCCTGTTCCCAGTGGCTTTTCCGCAGGAGAAGTTCTGATCCCCTT
GGCCGACGAGTATGACCCCATGTTTCCTAACGATTACGAGAAGGTGGTGAAGCGGCAGCG
AGAGGAGCGGCAGCGACAGCGGGAGCTGGAGAGACAGAAGGAGATAGAAGAGAGAGAGAA
GAGGCGTAAGGACAGACATGAGGCCAGTGGCTTTTCACGGCGGCCGGATCCAGATTCGGA
CGAAGATGAAGACTACGAGCGAGAGAGGAGGAAGCGAAGTATGGGCGGCGCTGCCATCGC
CCCCCCCACGTCTCTTGTGGAGAAGGACAAAGAGCTGCCCCGAGACTTCCCGTACGAAGA
GGACTCCAGACCCCGTTCACAGTCTTCCAAAGCTGCTATCCCTCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTGGCGCCGGAGCGGTCCGGCCGTCGGGGGCTGACGCCGAGCGCTCTGCCCGCCGTC
TCCGCGGCGCGTCGGCCCCGGTGCGTGGCCGCCCGGGAGCGTCGGCCGGGCGGACCGGCA
TCAAGCTGAGACCATGTCCCTGTACGATGACCTGGGGGTGGAGACCAGCGACTCAAAGAC
GGAAGGCTGGTCCAAGAACTTCAAGCTCCTGCAGTCGCAGCTGCAGGTGAAGAAGGCAGC
CCTCACGCAGGCCAAGAGCCAGAGGACAAAACAGAGCACAGTCCTTGCCCCGGTCATCGA
TCTGAAGCGGGGCGGCTCCTCGGACGAGCGCCAGGTAGTGGACACCCCGCCGCACGTGGC
CGCCGGCCTCAAGGACCCTGTTCCCAGTGGCTTTTCCGCAGGAGAAGTTCTGATCCCCTT
GGCCGACGAGTATGACCCCATGTTTCCTAACGATTACGAGAAGGTGGTGAAGCGGCAGCG
AGAGGAGCGGCAGCGACAGCGGGAGCTGGAGAGACAGAAGGAGATAGAAGAGAGAGAGAA
GAGGCGTAAGGACAGACATGAGGCCAGTGGCTTTTCACGGCGGCCGGATCCAGATTCGGA
CGAAGATGAAGACTACGAGCGAGAGAGGAGGAAGCGAAGTATGGGCGGCGCTGCCATCGC
CCCCCCCACGTCTCTTGTGGAGAAGGACAAAGAGCTGCCCCGAGACTTCCCGTACGAAGA
GGACTCCAGACCCCGTTCACAGTCTTCCAAAGCTGCTATCCCTCCCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5W011_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5W011_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               220-338, - strand, RNAz p=0.547266
               

               
               424-541, + strand, RNAz p=0.697589

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               220-338, - strand, RNAz p=0.547266
               

               
               424-541, + strand, RNAz p=0.697589

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               26-768, gnl|bosTau2|chr24 (14547297-14548042)
               

               
               26-768, gnl|Hg17|chr15 (33379074-33378312)
               

               
               26-768, gnl|Mm7|chr6 (92653181-92652473)
               


               
               126-256, gnl|bosTau2|chr13 (13051523-13051653)
               

               
               126-256, gnl|Hg17|chr10 (6179024-6179157)
               

               
               126-256, gnl|Mm7|chr6 (92653118-92652991)
               


               
               367-541, gnl|bosTau2|chr13 (13054789-13054962)
               

               
               367-541, gnl|Hg17|chr10 (6186894-6187067)
               

               
               367-541, gnl|Mm7|chr6 (92652872-92652709)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-768, gnl|bosTau2|chr24 (14547297-14548042)
               

               
               26-768, gnl|Hg17|chr15 (33379074-33378312)
               

               
               26-768, gnl|Mm7|chr6 (92653181-92652473)
               


               
               126-256, gnl|bosTau2|chr13 (13051523-13051653)
               

               
               126-256, gnl|Hg17|chr10 (6179024-6179157)
               

               
               126-256, gnl|Mm7|chr6 (92653118-92652991)
               


               
               367-541, gnl|bosTau2|chr13 (13054789-13054962)
               

               
               367-541, gnl|Hg17|chr10 (6186894-6187067)
               

               
               367-541, gnl|Mm7|chr6 (92652872-92652709)

	220-338, - strand, RNAz p=0.547266
	424-541, + strand, RNAz p=0.697589

	26-768, gnl\|bosTau2\|chr24 (14547297-14548042)
	26-768, gnl\|Hg17\|chr15 (33379074-33378312)
	26-768, gnl\|Mm7\|chr6 (92653181-92652473)

	126-256, gnl\|bosTau2\|chr13 (13051523-13051653)
	126-256, gnl\|Hg17\|chr10 (6179024-6179157)
	126-256, gnl\|Mm7\|chr6 (92653118-92652991)

	367-541, gnl\|bosTau2\|chr13 (13054789-13054962)
	367-541, gnl\|Hg17\|chr10 (6186894-6187067)
	367-541, gnl\|Mm7\|chr6 (92652872-92652709)