Non-Coding RNA Search

Ss1.1-Ova1-OVRM10061G04.5

Sequence:


               
               ACATTAAGTGGAGTAAAACGAAACCTCAGGATGAAGTGAAAGCCGTCCAGCTTGCCATTC
AGACGTCATTCTCCAACTCAGAGGGCAACCCCAGAAGCAGGTCTGACTCAAGTGCCGACT
GCCAGTGGTTAGACACTCTGAGGATGCGGCAGATTGCGTCCAACACGTCTTTACAGCGCT
CCCAGAGCAATCCCATCCTGGGGTCACAATTCTTTCCCTACTTCCATGACCCGGACTCCT
ATGCTGCTGCTGTGAGGCGGACTCAGGTGCCCATTAAGTATCAACAGATAACACCTATAA
ACCAGTCCAGAAGCTCCTCTCCCACTCAGTACGCACTGACCAAACACTTCTCTTCTCTGC
ACCTCAACTCCAAGGACAGCAGCTTTTCCAGTCTGAATTCTAACTCTTTGGAGAGGGGGC
GATATTCAGGTAGAAGCAGGAACAAATATGATCGGGGTAGCGTATCACTCAATTCTTCTC
CCAGAGGAAGATACGGGGGGAAAAGTCAGCATTCCACGCCTTCAAGAGAAAGATATTCTG
GAAAATTCTACAGGGTGTCTCAGTCAGCCCTCAACACTCACTCGTCGCCCGACCTCAAGA
GGAGCCCCAATGACTCCCAGCAGCCCAGGACCATCCCGGGGATGCCCCTGCGCTTCGACA
CCGAGTCGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTAAGTGGAGTAAAACGAAACCTCAGGATGAAGTGAAAGCCGTCCAGCTTGCCATTC
AGACGTCATTCTCCAACTCAGAGGGCAACCCCAGAAGCAGGTCTGACTCAAGTGCCGACT
GCCAGTGGTTAGACACTCTGAGGATGCGGCAGATTGCGTCCAACACGTCTTTACAGCGCT
CCCAGAGCAATCCCATCCTGGGGTCACAATTCTTTCCCTACTTCCATGACCCGGACTCCT
ATGCTGCTGCTGTGAGGCGGACTCAGGTGCCCATTAAGTATCAACAGATAACACCTATAA
ACCAGTCCAGAAGCTCCTCTCCCACTCAGTACGCACTGACCAAACACTTCTCTTCTCTGC
ACCTCAACTCCAAGGACAGCAGCTTTTCCAGTCTGAATTCTAACTCTTTGGAGAGGGGGC
GATATTCAGGTAGAAGCAGGAACAAATATGATCGGGGTAGCGTATCACTCAATTCTTCTC
CCAGAGGAAGATACGGGGGGAAAAGTCAGCATTCCACGCCTTCAAGAGAAAGATATTCTG
GAAAATTCTACAGGGTGTCTCAGTCAGCCCTCAACACTCACTCGTCGCCCGACCTCAAGA
GGAGCCCCAATGACTCCCAGCAGCCCAGGACCATCCCGGGGATGCCCCTGCGCTTCGACA
CCGAGTCGAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824360|ref|XP_591266.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824360|ref|XP_591266.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               547-660, - strand, RNAz p=0.921155

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               547-660, - strand, RNAz p=0.921155

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-113, gnl|bosTau2|chr2 (15366317-15366207)
               

               
               3-113, gnl|Hg17|chr2 (173954022-173954132)
               

               
               3-113, gnl|Mm7|chr2 (72281954-72282064)
               


               
               114-672, gnl|bosTau2|chr2 (15362433-15361872)
               

               
               114-672, gnl|Hg17|chr2 (173956287-173956848)
               

               
               114-672, gnl|Mm7|chr2 (72284944-72285511)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-113, gnl|bosTau2|chr2 (15366317-15366207)
               

               
               3-113, gnl|Hg17|chr2 (173954022-173954132)
               

               
               3-113, gnl|Mm7|chr2 (72281954-72282064)
               


               
               114-672, gnl|bosTau2|chr2 (15362433-15361872)
               

               
               114-672, gnl|Hg17|chr2 (173956287-173956848)
               

               
               114-672, gnl|Mm7|chr2 (72284944-72285511)

	3-113, gnl\|bosTau2\|chr2 (15366317-15366207)
	3-113, gnl\|Hg17\|chr2 (173954022-173954132)
	3-113, gnl\|Mm7\|chr2 (72281954-72282064)

	114-672, gnl\|bosTau2\|chr2 (15362433-15361872)
	114-672, gnl\|Hg17\|chr2 (173956287-173956848)
	114-672, gnl\|Mm7\|chr2 (72284944-72285511)