Non-Coding RNA Search

Ss1.1-Ova1-OVRM10063F12.5

Sequence:


               
               TTGTCCTTCTTTGAAGAAAGCAAGCAGGCATTCATTGGGCCTGGCCCAGCTCTCTGGAAA
CTTGGTAGCCGAGGCCGCCAGATTGCAAATGACTTGCTTTTATTAGCTTAGGGTTCCTGC
CATCTCACCTTCCCTGAAGCTACCCTCCCTGGAGGTTTCAGCTCCCCAGCTGAACTGCAA
GGCTCCGTGGCCTCCCTTGACCTCAAGGCCTTTCTGCCTGCGTGGCTGCAAGGACAGGGG
AGGGAGGTGTCCGGCGCTGCAAACTCTCTTTAAGACTGGTGTTCCGGGACTCCTCCGGAA
GTGGCTTTCCATTCTGAGATCCTGGTGACCGTGCCAGACACTGAGGCTGCTGGGCTGAGG
ATGGAGGGGCATGCCTCACAGGGGCATCCAGAACAGCCTGGTCCCACAGGATTCTTGGCT
CCCTGCAGGGAGGGAGAGTTTCTGTTTCTGGTGATTCAGCTCTGGGTGTGATGGGGTTAA
CCTAGCCCTATCTCTTGAGTGGCCTCTTTGTTCTCATGGGTGTCCTTGGGGCATCTGGGA
ACCAAGGTCTCTTCTGGGCCTCTGGTTTCTGCCTCCCACACACCCCCACCTGCAGGCCTG
CTGAGGCATTTGTCATGGTAACAAGGTACCTCTGGGTGGCATGTCGGGAGTTCCCGTTGT
GGCTCAGCAGGT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------AAGAAAAAAGACATTTACCATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTCCTTCTTTGAAGAAAGCAAGCAGGCATTCATTGGGCCTGGCCCAGCTCTCTGGAAA
CTTGGTAGCCGAGGCCGCCAGATTGCAAATGACTTGCTTTTATTAGCTTAGGGTTCCTGC
CATCTCACCTTCCCTGAAGCTACCCTCCCTGGAGGTTTCAGCTCCCCAGCTGAACTGCAA
GGCTCCGTGGCCTCCCTTGACCTCAAGGCCTTTCTGCCTGCGTGGCTGCAAGGACAGGGG
AGGGAGGTGTCCGGCGCTGCAAACTCTCTTTAAGACTGGTGTTCCGGGACTCCTCCGGAA
GTGGCTTTCCATTCTGAGATCCTGGTGACCGTGCCAGACACTGAGGCTGCTGGGCTGAGG
ATGGAGGGGCATGCCTCACAGGGGCATCCAGAACAGCCTGGTCCCACAGGATTCTTGGCT
CCCTGCAGGGAGGGAGAGTTTCTGTTTCTGGTGATTCAGCTCTGGGTGTGATGGGGTTAA
CCTAGCCCTATCTCTTGAGTGGCCTCTTTGTTCTCATGGGTGTCCTTGGGGCATCTGGGA
ACCAAGGTCTCTTCTGGGCCTCTGGTTTCTGCCTCCCACACACCCCCACCTGCAGGCCTG
CTGAGGCATTTGTCATGGTAACAAGGTACCTCTGGGTGGCATGTCGGGAGTTCCCGTTGT
GGCTCAGCAGGT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------AAGAAAAAAGACATTTACCATTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               14-126, + strand, RNAz p=0.909951

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-126, + strand, RNAz p=0.909951

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-126, gnl|bosTau2|chr19 (49284205-49284316)
               

               
               14-126, gnl|Hg17|chr17 (71888925-71888819)
               


               
               152-605, gnl|bosTau2|chr19 (49284466-49284928)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-126, gnl|bosTau2|chr19 (49284205-49284316)
               

               
               14-126, gnl|Hg17|chr17 (71888925-71888819)
               


               
               152-605, gnl|bosTau2|chr19 (49284466-49284928)

	14-126, gnl\|bosTau2\|chr19 (49284205-49284316)
	14-126, gnl\|Hg17\|chr17 (71888925-71888819)

	152-605, gnl\|bosTau2\|chr19 (49284466-49284928)