Ss1.1-Ova1-OVRM10064B04.5
|
AATATAAAATGTTTGGGTAAGCTTGGAAGTCAGTAGCTTTTAATATGTTAACATAGTGTC
TGGTCCATGGTTATCAATAAATTTGTTTTTAAAACTGGTATAATTTCAAGCAGTGAATCA
AGATTTTACTCATTCTTGAGGGTATATGGTCTGAATTTCAGTATTATCTTGTATCGGGGC
TTCATTGTTCGCTCTGGGCCGGGTGGTTTAGTGTCATTGCTGTCGAAGAAGGAGGCGGAG
TAACCTCCGGTCAGCCAAGAAACCCCCGCTATTCCGCAGCCATAGCCGCTCAAAAGATTT
GTGAGGTAGTAAAGCGTAGGGAGCTGGACTCAGAGGCGCCGCCGCGACAGCAGCAGCCAT
GGAGGACGAGATGCCTAAGACTCTATATGTCGGTAACCTTTCCAGAGATGTGACAGAAGC
TCTAATTCTCCAGCTCTTTAGCCAGATTGGACCTTGTAAAAACTGCAAAATGATTATGGA
TGTAAGGGTATTTTACTTAGTTAACTTCTTTTTTGGTTTTTGGTTTTTGGTTTTTGGTTT
TTTTATTTTGTCTTTTTAGGGCTGCACCCTAAAAGG------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------CTTTTTTTAATACATTGTTGAAATCCATTCTTTCAG
GAACTCTTAATTTATACAGCCTAAATTCATAGAGATTTTAGTAAATTTGTAATGAATCCA
TTTTGACCACGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AATATAAAATGTTTGGGTAAGCTTGGAAGTCAGTAGCTTTTAATATGTTAACATAGTGTC
TGGTCCATGGTTATCAATAAATTTGTTTTTAAAACTGGTATAATTTCAAGCAGTGAATCA
AGATTTTACTCATTCTTGAGGGTATATGGTCTGAATTTCAGTATTATCTTGTATCGGGGC
TTCATTGTTCGCTCTGGGCCGGGTGGTTTAGTGTCATTGCTGTCGAAGAAGGAGGCGGAG
TAACCTCCGGTCAGCCAAGAAACCCCCGCTATTCCGCAGCCATAGCCGCTCAAAAGATTT
GTGAGGTAGTAAAGCGTAGGGAGCTGGACTCAGAGGCGCCGCCGCGACAGCAGCAGCCAT
GGAGGACGAGATGCCTAAGACTCTATATGTCGGTAACCTTTCCAGAGATGTGACAGAAGC
TCTAATTCTCCAGCTCTTTAGCCAGATTGGACCTTGTAAAAACTGCAAAATGATTATGGA
TGTAAGGGTATTTTACTTAGTTAACTTCTTTTTTGGTTTTTGGTTTTTGGTTTTTGGTTT
TTTTATTTTGTCTTTTTAGGGCTGCACCCTAAAAGG------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------CTTTTTTTAATACATTGTTGAAATCCATTCTTTCAG
GAACTCTTAATTTATACAGCCTAAATTCATAGAGATTTTAGTAAATTTGTAATGAATCCA
TTTTGACCACGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
166-391, gnl|bosTau2|chr11 (49531670-49531446) |
|
166-391, gnl|canFam2|chr10 (71954264-71954550) |
|
166-391, gnl|danRer3|chr5 (63212156-63212461) |
|
166-391, gnl|echTel1|scaffold_285857 (43960-43670) |
|
166-391, gnl|hg17|chr2 (70387181-70387470) |
|
166-391, gnl|Hg17|chr2 (70387405-70387181) |
|
166-391, gnl|loxAfr1|scaffold_30312 (13727-14015) |
|
166-391, gnl|mm7|chr6 (86479617-86479325) |
|
166-391, gnl|Mm7|chr6 (86479388-86479615) |
|
166-391, gnl|monDom2|scaffold_1 (93783423-93783721) |
|
166-391, gnl|oryCun1|scaffold_212729 (92703-92414) |
|
166-391, gnl|panTro1|chr12 (72699762-72700051) |
|
166-391, gnl|rheMac2|chr13 (70527679-70527968) |
|
166-391, gnl|rn3|chr4 (120834860-120834571) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
166-391, gnl|bosTau2|chr11 (49531670-49531446) |
|
166-391, gnl|canFam2|chr10 (71954264-71954550) |
|
166-391, gnl|danRer3|chr5 (63212156-63212461) |
|
166-391, gnl|echTel1|scaffold_285857 (43960-43670) |
|
166-391, gnl|hg17|chr2 (70387181-70387470) |
|
166-391, gnl|Hg17|chr2 (70387405-70387181) |
|
166-391, gnl|loxAfr1|scaffold_30312 (13727-14015) |
|
166-391, gnl|mm7|chr6 (86479617-86479325) |
|
166-391, gnl|Mm7|chr6 (86479388-86479615) |
|
166-391, gnl|monDom2|scaffold_1 (93783423-93783721) |
|
166-391, gnl|oryCun1|scaffold_212729 (92703-92414) |
|
166-391, gnl|panTro1|chr12 (72699762-72700051) |
|
166-391, gnl|rheMac2|chr13 (70527679-70527968) |
|
166-391, gnl|rn3|chr4 (120834860-120834571) |
