Non-Coding RNA Search

Ss1.1-Ova1-OVRM10065C12.5

Sequence:


               
               ATTGGCGCCGGGCGGAGAGGCGGAATGTTCAACTCCTGACTCGGGCGGAAGCGTGGAAGC
CGCGCCGGCCGCCGTCCTCTCGACCCCGGTCGCCGCCCGTGCCCTGGCCGTGTGCGGGGC
CTCGGCGCCCCCGGCTGCTGCTCGCGTCCGGCCCGGGAGCCAGATTTTGTGGAAGTATAA
TACTTTGTCATTATGAGATGTCGTCTCTCGGTACCTCCTTTGTGCAAATTAAATTTGATG
ACTTGCAGTTTTTCGAAAACTGCGGCGGAGGAAGTTTTGGGAGTGTCTATCGAGCCAAAT
GGATATCACAGGACAAGGAGGTGGCTGTGAAGAAGCTACTCAAAATAGAGAAAGAGGCAG
AAATACTCAGTGTCCTCAGTCACAGTCATGATCGCACTTATGTAAGCTTTTCAACCTGGA
GTCAGAGGTCATAAGCTGCCTCGGACCTAGCAAAACCTTTGGGGCTGATCCATGAGGCCG
GTTCCCAATTTCCTTTCTGGGAGCCCCATAAATAGCAGTCGGTGCCACGTGTGCTTTAGG
GTTGAGTTTTACCAGGGGTCATCTGAACCGAGAGGGTTTCTTTCCATGGCGTGAAAGACC
TGAATGTTCTCTGAGCTCTCATCCTGGGGAGGTGAGCTTTCAGGCCTTGCTGGGCTTCAG
GCTGTTCCCGGGTCAGCCAAGAGGGGTCAGTAAAGAGTAACATGTAAGGTTTTCATCCTC
CTGTTTTCTGTTCATGAATTTGTGGTCTGCAGTTGTCTTTTGAAAAACCGAAAAGCATTA
TTTTTCTGCTGACAGATAAGCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGGCGCCGGGCGGAGAGGCGGAATGTTCAACTCCTGACTCGGGCGGAAGCGTGGAAGC
CGCGCCGGCCGCCGTCCTCTCGACCCCGGTCGCCGCCCGTGCCCTGGCCGTGTGCGGGGC
CTCGGCGCCCCCGGCTGCTGCTCGCGTCCGGCCCGGGAGCCAGATTTTGTGGAAGTATAA
TACTTTGTCATTATGAGATGTCGTCTCTCGGTACCTCCTTTGTGCAAATTAAATTTGATG
ACTTGCAGTTTTTCGAAAACTGCGGCGGAGGAAGTTTTGGGAGTGTCTATCGAGCCAAAT
GGATATCACAGGACAAGGAGGTGGCTGTGAAGAAGCTACTCAAAATAGAGAAAGAGGCAG
AAATACTCAGTGTCCTCAGTCACAGTCATGATCGCACTTATGTAAGCTTTTCAACCTGGA
GTCAGAGGTCATAAGCTGCCTCGGACCTAGCAAAACCTTTGGGGCTGATCCATGAGGCCG
GTTCCCAATTTCCTTTCTGGGAGCCCCATAAATAGCAGTCGGTGCCACGTGTGCTTTAGG
GTTGAGTTTTACCAGGGGTCATCTGAACCGAGAGGGTTTCTTTCCATGGCGTGAAAGACC
TGAATGTTCTCTGAGCTCTCATCCTGGGGAGGTGAGCTTTCAGGCCTTGCTGGGCTTCAG
GCTGTTCCCGGGTCAGCCAAGAGGGGTCAGTAAAGAGTAACATGTAAGGTTTTCATCCTC
CTGTTTTCTGTTCATGAATTTGTGGTCTGCAGTTGTCTTTTGAAAAACCGAAAAGCATTA
TTTTTCTGCTGACAGATAAGCAGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               161-359, - strand, RNAz p=0.940493
               

               
               400-512, - strand, RNAz p=0.659785

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-359, - strand, RNAz p=0.940493
               

               
               400-512, - strand, RNAz p=0.659785

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-123, gnl|bosTau2|chr2 (15550352-15550226)
               

               
               1-123, gnl|dasNov1|scaffold_56 (78290-78662)
               

               
               1-123, gnl|hg17|chr2 (173765938-173766276)
               

               
               1-123, gnl|Hg17|chr2 (173766084-173766197)
               

               
               1-123, gnl|mm7|chr2 (72129343-72129592)
               

               
               1-123, gnl|monDom2|scaffold_2 (72237895-72238289)
               

               
               1-123, gnl|oryCun1|scaffold_209980 (117262-116950)
               

               
               1-123, gnl|panTro1|chr13 (63406949-63407287)
               

               
               1-123, gnl|rheMac2|chr12 (36700578-36700915)
               

               
               1-123, gnl|rn3|chr3 (54651295-54651544)
               


               
               161-802, gnl|bosTau2|chr2 (15513004-15512358)
               

               
               161-802, gnl|Hg17|chr2 (173781230-173781882)
               

               
               161-802, gnl|Mm7|chr2 (72141895-72142521)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-123, gnl|bosTau2|chr2 (15550352-15550226)
               

               
               1-123, gnl|dasNov1|scaffold_56 (78290-78662)
               

               
               1-123, gnl|hg17|chr2 (173765938-173766276)
               

               
               1-123, gnl|Hg17|chr2 (173766084-173766197)
               

               
               1-123, gnl|mm7|chr2 (72129343-72129592)
               

               
               1-123, gnl|monDom2|scaffold_2 (72237895-72238289)
               

               
               1-123, gnl|oryCun1|scaffold_209980 (117262-116950)
               

               
               1-123, gnl|panTro1|chr13 (63406949-63407287)
               

               
               1-123, gnl|rheMac2|chr12 (36700578-36700915)
               

               
               1-123, gnl|rn3|chr3 (54651295-54651544)
               


               
               161-802, gnl|bosTau2|chr2 (15513004-15512358)
               

               
               161-802, gnl|Hg17|chr2 (173781230-173781882)
               

               
               161-802, gnl|Mm7|chr2 (72141895-72142521)

	161-359, - strand, RNAz p=0.940493
	400-512, - strand, RNAz p=0.659785

	1-123, gnl\|bosTau2\|chr2 (15550352-15550226)
	1-123, gnl\|dasNov1\|scaffold_56 (78290-78662)
	1-123, gnl\|hg17\|chr2 (173765938-173766276)
	1-123, gnl\|Hg17\|chr2 (173766084-173766197)
	1-123, gnl\|mm7\|chr2 (72129343-72129592)
	1-123, gnl\|monDom2\|scaffold_2 (72237895-72238289)
	1-123, gnl\|oryCun1\|scaffold_209980 (117262-116950)
	1-123, gnl\|panTro1\|chr13 (63406949-63407287)
	1-123, gnl\|rheMac2\|chr12 (36700578-36700915)
	1-123, gnl\|rn3\|chr3 (54651295-54651544)

	161-802, gnl\|bosTau2\|chr2 (15513004-15512358)
	161-802, gnl\|Hg17\|chr2 (173781230-173781882)
	161-802, gnl\|Mm7\|chr2 (72141895-72142521)