Non-Coding RNA Search

Ss1.1-Ova1-OVRM10065H09.5

Sequence:


               
               GTGAAGTGCCCCACTTAGTTCGGCACTCCAAAATGTCAGTTTTTTTCCACTTTTAAGGAG
TGACCCATTTTCAGAATGAGAGACACTGGCACGGAATCCTCTGGATGACTCCCTGAAATT
TTCTTGGTGGATCCGGGAGCTTTTATTTCCCTGCAGAAGGCAGCCAGTTCTCTCTCTTCT
GCCAAGCTGGGCTCTTCCCTCCGTACCTCTTCCTGCTGTGTCCTCCTCAGCCTGCAAACA
CCACCTCCTCTTCTCTGTCCCTAACCTTTCCAGTGGTGAATGGGAAGCTGCGGAGCCTGG
AGAGAGCTCTGGGCTGTTTGTGGCTGCTCTCGGGGGTGTTTGTGCTGTAATCTCTTCCGA
AGCTCTAGCAGAGGTCTGTTGATTGCCAAAAGGTCGTCTTTATCTTCAGCGTGAGAGAAG
AGAGAGGCTATTTTTAAAGATCTTTAACCAGCAGGGCTGCACACTACGGCCTAGATGGAC
TCCAACGTTCATTCTTCATTGCACTCATTCTTACCCGTTTTGAAACCCTTCAGATCCAGG
CTGGGAGACCTTATATGTCCTGATTTTAGGGCAGCACTTAAATTTGGCAGGCAGTTGTAA
TCGCTTCAAAAGATAGGTCAGGGAAGGGAAGGCCATCAGCTGACTCTTTTTCTGGGCTGG
GACCAACGGGGTACAGTGTGAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAGTGCCCCACTTAGTTCGGCACTCCAAAATGTCAGTTTTTTTCCACTTTTAAGGAG
TGACCCATTTTCAGAATGAGAGACACTGGCACGGAATCCTCTGGATGACTCCCTGAAATT
TTCTTGGTGGATCCGGGAGCTTTTATTTCCCTGCAGAAGGCAGCCAGTTCTCTCTCTTCT
GCCAAGCTGGGCTCTTCCCTCCGTACCTCTTCCTGCTGTGTCCTCCTCAGCCTGCAAACA
CCACCTCCTCTTCTCTGTCCCTAACCTTTCCAGTGGTGAATGGGAAGCTGCGGAGCCTGG
AGAGAGCTCTGGGCTGTTTGTGGCTGCTCTCGGGGGTGTTTGTGCTGTAATCTCTTCCGA
AGCTCTAGCAGAGGTCTGTTGATTGCCAAAAGGTCGTCTTTATCTTCAGCGTGAGAGAAG
AGAGAGGCTATTTTTAAAGATCTTTAACCAGCAGGGCTGCACACTACGGCCTAGATGGAC
TCCAACGTTCATTCTTCATTGCACTCATTCTTACCCGTTTTGAAACCCTTCAGATCCAGG
CTGGGAGACCTTATATGTCCTGATTTTAGGGCAGCACTTAAATTTGGCAGGCAGTTGTAA
TCGCTTCAAAAGATAGGTCAGGGAAGGGAAGGCCATCAGCTGACTCTTTTTCTGGGCTGG
GACCAACGGGGTACAGTGTGAGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               39-135, - strand, RNAz p=0.580801

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-135, - strand, RNAz p=0.580801

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-684, gnl|bosTau2|chr15 (26259179-26259874)
               

               
               1-684, gnl|canFam2|chr21 (38348771-38349355)
               

               
               1-684, gnl|echTel1|scaffold_314276 (3721-3152)
               

               
               1-684, gnl|hg17|chr11 (12096890-12097549)
               

               
               1-684, gnl|Hg17|chr11 (12096938-12097695)
               

               
               1-684, gnl|loxAfr1|scaffold_19367 (42814-42167)
               

               
               1-684, gnl|mm7|chr7 (108149098-108149700)
               

               
               1-684, gnl|Mm7|chr7 (108149150-108149848)
               

               
               1-684, gnl|oryCun1|scaffold_205158 (17370-16857)
               

               
               1-684, gnl|panTro1|chr9_random (5157278-5156613)
               

               
               1-684, gnl|rheMac2|chr14 (59796639-59795979)
               

               
               1-684, gnl|rn3|chr1 (170157346-170157918)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr15 (26259179-26259874)
               

               
               1-684, gnl|canFam2|chr21 (38348771-38349355)
               

               
               1-684, gnl|echTel1|scaffold_314276 (3721-3152)
               

               
               1-684, gnl|hg17|chr11 (12096890-12097549)
               

               
               1-684, gnl|Hg17|chr11 (12096938-12097695)
               

               
               1-684, gnl|loxAfr1|scaffold_19367 (42814-42167)
               

               
               1-684, gnl|mm7|chr7 (108149098-108149700)
               

               
               1-684, gnl|Mm7|chr7 (108149150-108149848)
               

               
               1-684, gnl|oryCun1|scaffold_205158 (17370-16857)
               

               
               1-684, gnl|panTro1|chr9_random (5157278-5156613)
               

               
               1-684, gnl|rheMac2|chr14 (59796639-59795979)
               

               
               1-684, gnl|rn3|chr1 (170157346-170157918)

	1-684, gnl\|bosTau2\|chr15 (26259179-26259874)
	1-684, gnl\|canFam2\|chr21 (38348771-38349355)
	1-684, gnl\|echTel1\|scaffold_314276 (3721-3152)
	1-684, gnl\|hg17\|chr11 (12096890-12097549)
	1-684, gnl\|Hg17\|chr11 (12096938-12097695)
	1-684, gnl\|loxAfr1\|scaffold_19367 (42814-42167)
	1-684, gnl\|mm7\|chr7 (108149098-108149700)
	1-684, gnl\|Mm7\|chr7 (108149150-108149848)
	1-684, gnl\|oryCun1\|scaffold_205158 (17370-16857)
	1-684, gnl\|panTro1\|chr9_random (5157278-5156613)
	1-684, gnl\|rheMac2\|chr14 (59796639-59795979)
	1-684, gnl\|rn3\|chr1 (170157346-170157918)