Non-Coding RNA Search

Ss1.1-Ova1-OVRM10068E09.5

Sequence:


               
               TACTCACCCCCTAACGCCGAGTTCCTTTTCACTGTCTAAAAAAGCGAGCGGCGGCGGGCG
CCCGGGAGAGCGAGCGGCCGGGCGGCGGGCAGGCGAGCAGCTACCGGGCAGCCGAGCGAG
CAAGCAGCACCGGCGCAGCGCGGTGACCCCAGCCCCGGTGGGCGCGGAGCAGAAGCCGGC
GCCGAGCCGATCTCAGCGCCCTCGCAGTTTCTCCCGGCCCGAGCCGGCCCTGCCCGGCAG
CGGCGGCGGCGGCAGCGGCGGCAGCGGCGCGTCCTCCAGCGGCGGCAGCGGCGGTCGCAG
CTCCCGGACCTGCACCTGCAACAGCTGTGCTCAGCCAAGTCAGACTGCTGGGACCGGCGC
CTCCTTCCCACCGCGACCTCCATTTCCCTGACGTTCTTAGCAGCCTCCAGTCCTGGTGGT
CAGCAGAGGCCTTAGCAGGACGAGGAGGAGGAGGCCTTTTGGCACCAGACCAATGCTGCG
AGGTGTGTGAGGATTAGAACCGCTCCATCCCTCAGCTGCCAGACCTGGAAAGCAGGATGG
AGCTGGAGTGAGGCGGAGGGGCTGCCAGCTGCTGACCGGCACGTGAGACGCTGGTGATTC
GTGGGTCACTGAGGCTGGACAACGTTCATGGCTCTCGGGTAGAACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTCACCCCCTAACGCCGAGTTCCTTTTCACTGTCTAAAAAAGCGAGCGGCGGCGGGCG
CCCGGGAGAGCGAGCGGCCGGGCGGCGGGCAGGCGAGCAGCTACCGGGCAGCCGAGCGAG
CAAGCAGCACCGGCGCAGCGCGGTGACCCCAGCCCCGGTGGGCGCGGAGCAGAAGCCGGC
GCCGAGCCGATCTCAGCGCCCTCGCAGTTTCTCCCGGCCCGAGCCGGCCCTGCCCGGCAG
CGGCGGCGGCGGCAGCGGCGGCAGCGGCGCGTCCTCCAGCGGCGGCAGCGGCGGTCGCAG
CTCCCGGACCTGCACCTGCAACAGCTGTGCTCAGCCAAGTCAGACTGCTGGGACCGGCGC
CTCCTTCCCACCGCGACCTCCATTTCCCTGACGTTCTTAGCAGCCTCCAGTCCTGGTGGT
CAGCAGAGGCCTTAGCAGGACGAGGAGGAGGAGGCCTTTTGGCACCAGACCAATGCTGCG
AGGTGTGTGAGGATTAGAACCGCTCCATCCCTCAGCTGCCAGACCTGGAAAGCAGGATGG
AGCTGGAGTGAGGCGGAGGGGCTGCCAGCTGCTGACCGGCACGTGAGACGCTGGTGATTC
GTGGGTCACTGAGGCTGGACAACGTTCATGGCTCTCGGGTAGAACCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-104, - strand, RNAz p=0.65804

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-104, - strand, RNAz p=0.65804

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-307, gnl|bosTau2|chr17 (32713416-32713721)
               

               
               1-307, gnl|Hg17|chr10 (80498732-80499034)
               

               
               1-307, gnl|Mm7|chr14 (23130439-23130743)
               


               
               314-439, gnl|bosTau2|chr17 (32763166-32763289)
               

               
               314-439, gnl|canFam2|chr4 (32064595-32065015)
               

               
               314-439, gnl|dasNov1|scaffold_65875 (4726-4266)
               

               
               314-439, gnl|hg17|chr10 (80548646-80549139)
               

               
               314-439, gnl|Hg17|chr10 (80548679-80548788)
               

               
               314-439, gnl|loxAfr1|scaffold_10564 (36253-36847)
               

               
               314-439, gnl|mm7|chr14 (23173809-23174268)
               

               
               314-439, gnl|oryCun1|scaffold_202255 (1212-1688)
               

               
               314-439, gnl|panTro1|chr8 (81939138-81939630)
               

               
               314-439, gnl|rheMac2|chr9 (57952124-57951632)
               

               
               314-439, gnl|rn3|chr16 (1080872-1081351)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-307, gnl|bosTau2|chr17 (32713416-32713721)
               

               
               1-307, gnl|Hg17|chr10 (80498732-80499034)
               

               
               1-307, gnl|Mm7|chr14 (23130439-23130743)
               


               
               314-439, gnl|bosTau2|chr17 (32763166-32763289)
               

               
               314-439, gnl|canFam2|chr4 (32064595-32065015)
               

               
               314-439, gnl|dasNov1|scaffold_65875 (4726-4266)
               

               
               314-439, gnl|hg17|chr10 (80548646-80549139)
               

               
               314-439, gnl|Hg17|chr10 (80548679-80548788)
               

               
               314-439, gnl|loxAfr1|scaffold_10564 (36253-36847)
               

               
               314-439, gnl|mm7|chr14 (23173809-23174268)
               

               
               314-439, gnl|oryCun1|scaffold_202255 (1212-1688)
               

               
               314-439, gnl|panTro1|chr8 (81939138-81939630)
               

               
               314-439, gnl|rheMac2|chr9 (57952124-57951632)
               

               
               314-439, gnl|rn3|chr16 (1080872-1081351)

	1-307, gnl\|bosTau2\|chr17 (32713416-32713721)
	1-307, gnl\|Hg17\|chr10 (80498732-80499034)
	1-307, gnl\|Mm7\|chr14 (23130439-23130743)

	314-439, gnl\|bosTau2\|chr17 (32763166-32763289)
	314-439, gnl\|canFam2\|chr4 (32064595-32065015)
	314-439, gnl\|dasNov1\|scaffold_65875 (4726-4266)
	314-439, gnl\|hg17\|chr10 (80548646-80549139)
	314-439, gnl\|Hg17\|chr10 (80548679-80548788)
	314-439, gnl\|loxAfr1\|scaffold_10564 (36253-36847)
	314-439, gnl\|mm7\|chr14 (23173809-23174268)
	314-439, gnl\|oryCun1\|scaffold_202255 (1212-1688)
	314-439, gnl\|panTro1\|chr8 (81939138-81939630)
	314-439, gnl\|rheMac2\|chr9 (57952124-57951632)
	314-439, gnl\|rn3\|chr16 (1080872-1081351)