Non-Coding RNA Search

Ss1.1-Ova1-OVRM10076A03.5

Sequence:


               
               ATGGCCAAAAACATATCATCATATTATTACTTTAAATGCATTAAAAGATATTTTGTAAAA
CTGGTTATAGAAATACTTTATAGATTAAATACATCATTTTATATATTTCACTGTTTAGAA
TATTGATAGTAGTCATATGCATGTAAACACTTTTCCTTAAAGGAAATTTTTTGAGTGTTT
AGAAATCTGATTTTTCTTTGTCAAATATTTGCTTTGCTATTTTTCCAAAAATAGCTTGTT
TATTATATTTGGAAAATTACATTAGATGCATTAAGTACTTCCTGAGCTTCCCAGTGACTA
ATTGAACCCAGAGAGAACATTTGCAAATGCCAGACCTTTTTCTCTTTTCAAATAAAAATA
AGCAACTTGAAGGTTTATGGCATTTTTAGAAGGATACCACTACATTCAGTATCATTGACT
GTTTTACAATAACGACTAGCCAATAGAAACCTAAACCCAGCATGTTGTGTTATTGTTCTG
TGTGAAGGTGGAAATGCGTTGTTAGAACATTATCACAAAATTGAAAGAAAAGGAGCCAGC
CAGGAATTAGAAAGAGGCACGCATCAGCAAATATAAAACATTTTGCTGCCTTCAGCCACT
GTTTAGTATTTATCCAGAAATTTCCTTCGCTGTTTGGTATACCAAGATGTTTTCAAAGAC
AAGCATTTCAACTGCTTTAGTCTCTCTTATAATCCCTTATGCATTGTCAAAGGAGATAGC
TAATGGAAAGTGGTACTTTTTATAGATGTAAGAGGTTTAATTGAGCTTCCATTAGAGAAA
ACATTTTTACGAGGTGGATGAGAGAGAGTATATTCTATGCTTCATATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCCAAAAACATATCATCATATTATTACTTTAAATGCATTAAAAGATATTTTGTAAAA
CTGGTTATAGAAATACTTTATAGATTAAATACATCATTTTATATATTTCACTGTTTAGAA
TATTGATAGTAGTCATATGCATGTAAACACTTTTCCTTAAAGGAAATTTTTTGAGTGTTT
AGAAATCTGATTTTTCTTTGTCAAATATTTGCTTTGCTATTTTTCCAAAAATAGCTTGTT
TATTATATTTGGAAAATTACATTAGATGCATTAAGTACTTCCTGAGCTTCCCAGTGACTA
ATTGAACCCAGAGAGAACATTTGCAAATGCCAGACCTTTTTCTCTTTTCAAATAAAAATA
AGCAACTTGAAGGTTTATGGCATTTTTAGAAGGATACCACTACATTCAGTATCATTGACT
GTTTTACAATAACGACTAGCCAATAGAAACCTAAACCCAGCATGTTGTGTTATTGTTCTG
TGTGAAGGTGGAAATGCGTTGTTAGAACATTATCACAAAATTGAAAGAAAAGGAGCCAGC
CAGGAATTAGAAAGAGGCACGCATCAGCAAATATAAAACATTTTGCTGCCTTCAGCCACT
GTTTAGTATTTATCCAGAAATTTCCTTCGCTGTTTGGTATACCAAGATGTTTTCAAAGAC
AAGCATTTCAACTGCTTTAGTCTCTCTTATAATCCCTTATGCATTGTCAAAGGAGATAGC
TAATGGAAAGTGGTACTTTTTATAGATGTAAGAGGTTTAATTGAGCTTCCATTAGAGAAA
ACATTTTTACGAGGTGGATGAGAGAGAGTATATTCTATGCTTCATATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               185-284, - strand, RNAz p=0.808469
               

               
               710-828, - strand, RNAz p=0.920567

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-284, - strand, RNAz p=0.808469
               

               
               710-828, - strand, RNAz p=0.920567

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               77-828, gnl|bosTau2|chr10 (9930342-9929567)
               

               
               77-828, gnl|Hg17|chr15 (66258104-66258876)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-828, gnl|bosTau2|chr10 (9930342-9929567)
               

               
               77-828, gnl|Hg17|chr15 (66258104-66258876)

	185-284, - strand, RNAz p=0.808469
	710-828, - strand, RNAz p=0.920567

	77-828, gnl\|bosTau2\|chr10 (9930342-9929567)
	77-828, gnl\|Hg17\|chr15 (66258104-66258876)