Non-Coding RNA Search

Ss1.1-Ova1-OVRM10077B02.5

Sequence:


               
               CTCCGCCCCCCGCGCAGCCACGTCTCAGCCAGAGCAGCCGGGCCGGGCGTTCGCCGCGGC
GTTCGCCGCGGCTTCCGCAGCGCAGGGGTATCATGATATTACTTGGTTTGATTTCAAGCT
ATCTGTGAGCCTTCAAATCCTCTCCCCAAAATGGAAAACCTAGGGTGGTCCATCCCAGGA
GCTCTTGGCTGTTGCTAATGGCAGAAATCAAACTCACCAGCAGTTCCCTCACAGCCCCTG
AGTGTCAGCCCAGCCTGTGTCATCCTGGCCATGGATGGTGTGGTGGCCATGCAGGATGGT
CCAGAGGACAGATCCAGCAATGGCCCCGAGGCTCTCCCAAAGCCCCCAGGCTCACTGGCG
CTACTGGACCAGCAGGAGGAAGCCCAGTGCACCAATGTCGAGGTAAACAGAGCATCAGAT
GAAGGCGGAAGCCAAGGGGACACCTGTCAGAATGGGCCGATGCCACAGTTCCCAGACCCT
CCATCGTCAGTGGGTCCTGACGCCTCTCCAGGTGTGGCTGGTTTCCATAACAACCTAAGG
AAGTCTCAGGGGACTAGTGCTGAGGGCAGTGGTAGAAAAGAAGCTTTGCAGTCCCTGAGA
CTCAGTCTTCCTATGCAAGAAACGCAACTGTGCTCAACAGAGGCCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCGCCCCCCGCGCAGCCACGTCTCAGCCAGAGCAGCCGGGCCGGGCGTTCGCCGCGGC
GTTCGCCGCGGCTTCCGCAGCGCAGGGGTATCATGATATTACTTGGTTTGATTTCAAGCT
ATCTGTGAGCCTTCAAATCCTCTCCCCAAAATGGAAAACCTAGGGTGGTCCATCCCAGGA
GCTCTTGGCTGTTGCTAATGGCAGAAATCAAACTCACCAGCAGTTCCCTCACAGCCCCTG
AGTGTCAGCCCAGCCTGTGTCATCCTGGCCATGGATGGTGTGGTGGCCATGCAGGATGGT
CCAGAGGACAGATCCAGCAATGGCCCCGAGGCTCTCCCAAAGCCCCCAGGCTCACTGGCG
CTACTGGACCAGCAGGAGGAAGCCCAGTGCACCAATGTCGAGGTAAACAGAGCATCAGAT
GAAGGCGGAAGCCAAGGGGACACCTGTCAGAATGGGCCGATGCCACAGTTCCCAGACCCT
CCATCGTCAGTGGGTCCTGACGCCTCTCCAGGTGTGGCTGGTTTCCATAACAACCTAAGG
AAGTCTCAGGGGACTAGTGCTGAGGGCAGTGGTAGAAAAGAAGCTTTGCAGTCCCTGAGA
CTCAGTCTTCCTATGCAAGAAACGCAACTGTGCTCAACAGAGGCCTCA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               165-284, - strand, RNAz p=0.695355
               

               
               289-389, - strand, RNAz p=0.7799
               

               
               496-612, + strand, RNAz p=0.839271

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-284, - strand, RNAz p=0.695355
               

               
               289-389, - strand, RNAz p=0.7799
               

               
               496-612, + strand, RNAz p=0.839271

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               302-389, - strand, RNAmicro p=0.900579

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               302-389, - strand, RNAmicro p=0.900579

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               87-389, gnl|bosTau2|chr17 (23201738-23201420)
               

               
               87-389, gnl|Hg17|chr12 (132009248-132008931)
               

               
               87-389, gnl|Mm7|chr5 (109348125-109348437)
               


               
               392-632, gnl|bosTau2|chr17 (23198870-23198633)
               

               
               392-632, gnl|canFam2|chr26 (3344294-3344080)
               

               
               392-632, gnl|danRer3|chr5 (9170344-9170531)
               

               
               392-632, gnl|dasNov1|scaffold_143648 (6276-6049)
               

               
               392-632, gnl|echTel1|scaffold_289752 (29156-28939)
               

               
               392-632, gnl|fr1|chrUn (71836208-71835996)
               

               
               392-632, gnl|galGal2|chr15 (1437308-1437525)
               

               
               392-632, gnl|hg17|chr12 (132003464-132003678)
               

               
               392-632, gnl|Hg17|chr12 (132003745-132003475)
               

               
               392-632, gnl|mm7|chr5 (109351144-109350939)
               

               
               392-632, gnl|Mm7|chr5 (109350864-109351131)
               

               
               392-632, gnl|monDom2|scaffold_54 (1961371-1961588)
               

               
               392-632, gnl|oryCun1|scaffold_214507 (80166-80380)
               

               
               392-632, gnl|rheMac2|chr11 (134116117-134116331)
               

               
               392-632, gnl|rn3|chr12 (46506617-46506822)
               

               
               392-632, gnl|tetNig1|chr12 (10820627-10820415)
               

               
               392-632, gnl|xenTro1|scaffold_118 (1620054-1620262)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-389, gnl|bosTau2|chr17 (23201738-23201420)
               

               
               87-389, gnl|Hg17|chr12 (132009248-132008931)
               

               
               87-389, gnl|Mm7|chr5 (109348125-109348437)
               


               
               392-632, gnl|bosTau2|chr17 (23198870-23198633)
               

               
               392-632, gnl|canFam2|chr26 (3344294-3344080)
               

               
               392-632, gnl|danRer3|chr5 (9170344-9170531)
               

               
               392-632, gnl|dasNov1|scaffold_143648 (6276-6049)
               

               
               392-632, gnl|echTel1|scaffold_289752 (29156-28939)
               

               
               392-632, gnl|fr1|chrUn (71836208-71835996)
               

               
               392-632, gnl|galGal2|chr15 (1437308-1437525)
               

               
               392-632, gnl|hg17|chr12 (132003464-132003678)
               

               
               392-632, gnl|Hg17|chr12 (132003745-132003475)
               

               
               392-632, gnl|mm7|chr5 (109351144-109350939)
               

               
               392-632, gnl|Mm7|chr5 (109350864-109351131)
               

               
               392-632, gnl|monDom2|scaffold_54 (1961371-1961588)
               

               
               392-632, gnl|oryCun1|scaffold_214507 (80166-80380)
               

               
               392-632, gnl|rheMac2|chr11 (134116117-134116331)
               

               
               392-632, gnl|rn3|chr12 (46506617-46506822)
               

               
               392-632, gnl|tetNig1|chr12 (10820627-10820415)
               

               
               392-632, gnl|xenTro1|scaffold_118 (1620054-1620262)

	165-284, - strand, RNAz p=0.695355
	289-389, - strand, RNAz p=0.7799
	496-612, + strand, RNAz p=0.839271

	87-389, gnl\|bosTau2\|chr17 (23201738-23201420)
	87-389, gnl\|Hg17\|chr12 (132009248-132008931)
	87-389, gnl\|Mm7\|chr5 (109348125-109348437)

	392-632, gnl\|bosTau2\|chr17 (23198870-23198633)
	392-632, gnl\|canFam2\|chr26 (3344294-3344080)
	392-632, gnl\|danRer3\|chr5 (9170344-9170531)
	392-632, gnl\|dasNov1\|scaffold_143648 (6276-6049)
	392-632, gnl\|echTel1\|scaffold_289752 (29156-28939)
	392-632, gnl\|fr1\|chrUn (71836208-71835996)
	392-632, gnl\|galGal2\|chr15 (1437308-1437525)
	392-632, gnl\|hg17\|chr12 (132003464-132003678)
	392-632, gnl\|Hg17\|chr12 (132003745-132003475)
	392-632, gnl\|mm7\|chr5 (109351144-109350939)
	392-632, gnl\|Mm7\|chr5 (109350864-109351131)
	392-632, gnl\|monDom2\|scaffold_54 (1961371-1961588)
	392-632, gnl\|oryCun1\|scaffold_214507 (80166-80380)
	392-632, gnl\|rheMac2\|chr11 (134116117-134116331)
	392-632, gnl\|rn3\|chr12 (46506617-46506822)
	392-632, gnl\|tetNig1\|chr12 (10820627-10820415)
	392-632, gnl\|xenTro1\|scaffold_118 (1620054-1620262)