Non-Coding RNA Search

Ss1.1-Ova1-OVRM10077E09.5

Sequence:


               
               CATGTAACATAACACCTCTCTCTGAAATTTACTCCCTATACCATCTCTGGAACATTTTCA
GTAGATGGTGGAAAACTGGAGTTTGTCGGAGGTCAGCTTGCTGATAAAAGCTTCTTGGGC
GCTGGATAAGATTATCAGAGGAGGTAATTATACCACCTCCAGATCTTGCGAAGTGAGTGT
CATCTAGATCTGACAGCTGTCAAGATAGGGTTCTGCTGGAAGCCTATGGGATTAACTCAA
TTTAGGAGAGTCCCTGCCGCTGCAGTCATCTCTGACTCTTAAAAGAATAATTATTTTTGT
AGCCTCTGAGGAATCATGTTTGGGACATATTTGGTTCTTGCGTTTGAAGCTTCGTTCATG
CATTCAGTCAACAAACATTTACTGAGCACTTTCTATGTGCAGCCCCTATGGTAGGATCTA
GCGAAGAAAATAGACACCCCAGCTACCCTCTCGAAGTTTCTGTGACAGGATGCAACGTGC
ATAAGCTTTTCAAAATCCTCAGTTGCTTTCGGAGTCTTTGTTGGGCTATGTGTCATGGAT
GTATCCTTGTGCGTAGATACTTGTCATTCTCCGTGATGGGGGGGCCCACCTGCGGCCGGG
CCTCCTTAAAGCAGGAAGCACAGCAAGGCTCTGCGGGGAGGCAGGGGGTTCCTGGGCTTA
GCGCCCCCTTGGGAGTAGTACCTCATTTGCACGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGTAACATAACACCTCTCTCTGAAATTTACTCCCTATACCATCTCTGGAACATTTTCA
GTAGATGGTGGAAAACTGGAGTTTGTCGGAGGTCAGCTTGCTGATAAAAGCTTCTTGGGC
GCTGGATAAGATTATCAGAGGAGGTAATTATACCACCTCCAGATCTTGCGAAGTGAGTGT
CATCTAGATCTGACAGCTGTCAAGATAGGGTTCTGCTGGAAGCCTATGGGATTAACTCAA
TTTAGGAGAGTCCCTGCCGCTGCAGTCATCTCTGACTCTTAAAAGAATAATTATTTTTGT
AGCCTCTGAGGAATCATGTTTGGGACATATTTGGTTCTTGCGTTTGAAGCTTCGTTCATG
CATTCAGTCAACAAACATTTACTGAGCACTTTCTATGTGCAGCCCCTATGGTAGGATCTA
GCGAAGAAAATAGACACCCCAGCTACCCTCTCGAAGTTTCTGTGACAGGATGCAACGTGC
ATAAGCTTTTCAAAATCCTCAGTTGCTTTCGGAGTCTTTGTTGGGCTATGTGTCATGGAT
GTATCCTTGTGCGTAGATACTTGTCATTCTCCGTGATGGGGGGGCCCACCTGCGGCCGGG
CCTCCTTAAAGCAGGAAGCACAGCAAGGCTCTGCGGGGAGGCAGGGGGTTCCTGGGCTTA
GCGCCCCCTTGGGAGTAGTACCTCATTTGCACGTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               42-234, + strand, RNAz p=0.631323

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-234, + strand, RNAz p=0.631323

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               20-504, gnl|bosTau2|chr25 (27760436-27759955)
               

               
               20-504, gnl|Hg17|chr7 (69515239-69516195)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-504, gnl|bosTau2|chr25 (27760436-27759955)
               

               
               20-504, gnl|Hg17|chr7 (69515239-69516195)

	20-504, gnl\|bosTau2\|chr25 (27760436-27759955)
	20-504, gnl\|Hg17\|chr7 (69515239-69516195)