Ss1.1-Ova1-OVRM10079D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGCCGCTGGATCAGCCGGACGTCCCCAGGCCCTGGCCATGCGGCTCCTGCTACTTCT GGCCCCACTGGGCTGGCTGCTTCTGACCGAAACGAAGGGTGACGCCAAACCGGAGGACAA CCTCTTGGTGCTCACGGTGGCCACGAAGGAGACCGAGGGGTTCCGACGCTTCAAGCGCTC AGCCCAGTTCTTCAACTACAAGATCCAGGCGCTGGGGCTGGGGGAGGACTGGAATGAGAA GGAGGCATCGTCGGGTGGAGGGCTGAAGGTTCGGCTGCTGAAGAAAGCCCTGGAAAAGCA TGCAGACGAGAACCTGGTCATTCTCTTCACAGACAGCTATGACGTGGTGTTTGCCTCCGG GCCCCGAGAGCTGCTGAAGAAGTTCCGGCAGGCCAAGAGCCAGGTGGTCTTCTCAGCAGA GGAGCTCATCTACCCGGACCGCAGGCTGGAGGCCAAGTACCCGGCCGTCTCCGACGGCAA GAGGTTCCTGGGCTCTGGAGGCTTCATTGGTTATGCCCCCAACCTCAGCAAACTGGTGGC TGAGTGGGAGGGTCAGGACAGCGACAGCGACCAACTCTTTTATACCAAGATATTCTTGGA CCCAGAGAAGAGGGAGCGGATCAATATCACCTTGGACCACCGCTGCCGTATCTTCCAGAA TCTGGATGGAGCCTTGGATGAGGTCGTGCTCAAGTTCGAGATGGGCCAAGTGAGAGCGAG GAACCTGGCCTACGACACCCTCCCGGTCCTGATTCACGGCAATGGGCCCACCAAGCTGCA GCTGAACTACCTGGGCAACTACATCCCGCGCTTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGCCGCTGGATCAGCCGGACGTCCCCAGGCCCTGGCCATGCGGCTCCTGCTACTTCT GGCCCCACTGGGCTGGCTGCTTCTGACCGAAACGAAGGGTGACGCCAAACCGGAGGACAA CCTCTTGGTGCTCACGGTGGCCACGAAGGAGACCGAGGGGTTCCGACGCTTCAAGCGCTC AGCCCAGTTCTTCAACTACAAGATCCAGGCGCTGGGGCTGGGGGAGGACTGGAATGAGAA GGAGGCATCGTCGGGTGGAGGGCTGAAGGTTCGGCTGCTGAAGAAAGCCCTGGAAAAGCA TGCAGACGAGAACCTGGTCATTCTCTTCACAGACAGCTATGACGTGGTGTTTGCCTCCGG GCCCCGAGAGCTGCTGAAGAAGTTCCGGCAGGCCAAGAGCCAGGTGGTCTTCTCAGCAGA GGAGCTCATCTACCCGGACCGCAGGCTGGAGGCCAAGTACCCGGCCGTCTCCGACGGCAA GAGGTTCCTGGGCTCTGGAGGCTTCATTGGTTATGCCCCCAACCTCAGCAAACTGGTGGC TGAGTGGGAGGGTCAGGACAGCGACAGCGACCAACTCTTTTATACCAAGATATTCTTGGA CCCAGAGAAGAGGGAGCGGATCAATATCACCTTGGACCACCGCTGCCGTATCTTCCAGAA TCTGGATGGAGCCTTGGATGAGGTCGTGCTCAAGTTCGAGATGGGCCAAGTGAGAGCGAG GAACCTGGCCTACGACACCCTCCCGGTCCTGATTCACGGCAATGGGCCCACCAAGCTGCA GCTGAACTACCTGGGCAACTACATCCCGCGCTTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 384-501, + strand, RNAz p=0.752614 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 384-501, + strand, RNAz p=0.752614 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-116, gnl|bosTau2|chr16 (21388946-21388831) | |
| 1-116, gnl|canFam2|chr2 (87225414-87225226) | |
| 1-116, gnl|dasNov1|scaffold_9055 (39747-39949) | |
| 1-116, gnl|echTel1|scaffold_295150 (83941-83774) | |
| 1-116, gnl|galGal2|chr21 (5262978-5262679) | |
| 1-116, gnl|hg17|chr1 (11929034-11929250) | |
| 1-116, gnl|Hg17|chr1 (11929062-11929178) | |
| 1-116, gnl|loxAfr1|scaffold_53403 (33685-33449) | |
| 1-116, gnl|mm7|chr4 (146926289-146926099) | |
| 1-116, gnl|Mm7|chr4 (146926259-146926144) | |
| 1-116, gnl|monDom2|scaffold_175 (154096-153789) | |
| 1-116, gnl|panTro1|chr1 (12133306-12133522) | |
| 1-116, gnl|rheMac2|chr1 (15042894-15043110) | |
| 1-116, gnl|rn3|chr5 (165022793-165022607) | |
| 333-501, gnl|bosTau2|chr16 (21379260-21379092) | |
| 333-501, gnl|canFam2|chr2 (87216876-87216684) | |
| 333-501, gnl|danRer3|chr14 (44655955-44655776) | |
| 333-501, gnl|dasNov1|scaffold_9055 (48134-48326) | |
| 333-501, gnl|echTel1|scaffold_294474 (1205-1377) | |
| 333-501, gnl|fr1|chrUn (245266418-245266604) | |
| 333-501, gnl|galGal2|chr21 (5256440-5256262) | |
| 333-501, gnl|hg17|chr1 (11944662-11944855) | |
| 333-501, gnl|Hg17|chr1 (11944676-11944844) | |
| 333-501, gnl|loxAfr1|scaffold_683 (143209-143037) | |
| 333-501, gnl|mm7|chr4 (146920847-146920654) | |
| 333-501, gnl|Mm7|chr4 (146920831-146920663) | |
| 333-501, gnl|monDom2|scaffold_175 (134351-134160) | |
| 333-501, gnl|oryCun1|scaffold_158427 (7463-7272) | |
| 333-501, gnl|panTro1|chr1 (12148860-12149053) | |
| 333-501, gnl|rheMac2|chr1 (15058982-15059175) | |
| 333-501, gnl|rn3|chr12 (20847259-20847450) | |
| 333-501, gnl|tetNig1|chrUn_random (83939429-83939242) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-116, gnl|bosTau2|chr16 (21388946-21388831) | |
| 1-116, gnl|canFam2|chr2 (87225414-87225226) | |
| 1-116, gnl|dasNov1|scaffold_9055 (39747-39949) | |
| 1-116, gnl|echTel1|scaffold_295150 (83941-83774) | |
| 1-116, gnl|galGal2|chr21 (5262978-5262679) | |
| 1-116, gnl|hg17|chr1 (11929034-11929250) | |
| 1-116, gnl|Hg17|chr1 (11929062-11929178) | |
| 1-116, gnl|loxAfr1|scaffold_53403 (33685-33449) | |
| 1-116, gnl|mm7|chr4 (146926289-146926099) | |
| 1-116, gnl|Mm7|chr4 (146926259-146926144) | |
| 1-116, gnl|monDom2|scaffold_175 (154096-153789) | |
| 1-116, gnl|panTro1|chr1 (12133306-12133522) | |
| 1-116, gnl|rheMac2|chr1 (15042894-15043110) | |
| 1-116, gnl|rn3|chr5 (165022793-165022607) | |
| 333-501, gnl|bosTau2|chr16 (21379260-21379092) | |
| 333-501, gnl|canFam2|chr2 (87216876-87216684) | |
| 333-501, gnl|danRer3|chr14 (44655955-44655776) | |
| 333-501, gnl|dasNov1|scaffold_9055 (48134-48326) | |
| 333-501, gnl|echTel1|scaffold_294474 (1205-1377) | |
| 333-501, gnl|fr1|chrUn (245266418-245266604) | |
| 333-501, gnl|galGal2|chr21 (5256440-5256262) | |
| 333-501, gnl|hg17|chr1 (11944662-11944855) | |
| 333-501, gnl|Hg17|chr1 (11944676-11944844) | |
| 333-501, gnl|loxAfr1|scaffold_683 (143209-143037) | |
| 333-501, gnl|mm7|chr4 (146920847-146920654) | |
| 333-501, gnl|Mm7|chr4 (146920831-146920663) | |
| 333-501, gnl|monDom2|scaffold_175 (134351-134160) | |
| 333-501, gnl|oryCun1|scaffold_158427 (7463-7272) | |
| 333-501, gnl|panTro1|chr1 (12148860-12149053) | |
| 333-501, gnl|rheMac2|chr1 (15058982-15059175) | |
| 333-501, gnl|rn3|chr12 (20847259-20847450) | |
| 333-501, gnl|tetNig1|chrUn_random (83939429-83939242) |