Non-Coding RNA Search

Ss1.1-Ova1-OVRM10083F07.5

Sequence:


               
               GGGCAGGGCACCGAAGTCTGAGCGAGGCTGACCTGCTGCAGCTCCCGCCTCGCGCGCTCG
CCCCACTCCACTGTCGCCTGAGCTCTAGAGAAAGCCCTCTCGGGAGAAGCAGCTTCAGTT
CCCCAGGGCAGATCCAGGTTCAGGTCCTGGCCGTAAGTCGCCATGGCGCAGCAAGCCGCC
GATAAGTATCTCTATGTGGATAAAAACTTCATCAATAACCCGCTGGCCCAGGCCGACTGG
GCTGCCAAGAAGCTGGTATGGGTGCCTTCCGACAAGAGTGGCTTTGAGCCCGCCAGCCTC
AAGGAGGAGGTGGGCGAGGAGGCCATCGTGGAGCTGGTGGAGAATGGGAAGAAGGTGAAG
GTGAACAAGGATGACATCCAGAAGATGAACCCGCCCAAGTTCTCCAAGGTGGAGGACATG
GCCGAGCTCACTTGCCTCAACGAAGCTTCAGTGCTGCACAACCTCAAGGAGCGCTACTAC
TCAGGGCTCATCTATGTGAGTGGGCGGGGCTCTGCGGGGAGGGAGGCCCCAGGGCTTATC
TGCTATGCAGAGGAGGGAGGCCCCAGGGCTTATCTGCATAATGGGGTGGGGCTATGTAGG
GGTGGGTGGCCCCAGGGCTTGGCTACAGAAGTGGGCGGGGCTCTGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGGGCACCGAAGTCTGAGCGAGGCTGACCTGCTGCAGCTCCCGCCTCGCGCGCTCG
CCCCACTCCACTGTCGCCTGAGCTCTAGAGAAAGCCCTCTCGGGAGAAGCAGCTTCAGTT
CCCCAGGGCAGATCCAGGTTCAGGTCCTGGCCGTAAGTCGCCATGGCGCAGCAAGCCGCC
GATAAGTATCTCTATGTGGATAAAAACTTCATCAATAACCCGCTGGCCCAGGCCGACTGG
GCTGCCAAGAAGCTGGTATGGGTGCCTTCCGACAAGAGTGGCTTTGAGCCCGCCAGCCTC
AAGGAGGAGGTGGGCGAGGAGGCCATCGTGGAGCTGGTGGAGAATGGGAAGAAGGTGAAG
GTGAACAAGGATGACATCCAGAAGATGAACCCGCCCAAGTTCTCCAAGGTGGAGGACATG
GCCGAGCTCACTTGCCTCAACGAAGCTTCAGTGCTGCACAACCTCAAGGAGCGCTACTAC
TCAGGGCTCATCTATGTGAGTGGGCGGGGCTCTGCGGGGAGGGAGGCCCCAGGGCTTATC
TGCTATGCAGAGGAGGGAGGCCCCAGGGCTTATCTGCATAATGGGGTGGGGCTATGTAGG
GGTGGGTGGCCCCAGGGCTTGGCTACAGAAGTGGGCGGGGCTCTGCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1871206|gb|AAC35212.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1871206|gb|AAC35212.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               142-500, - strand, RNAz p=0.939329
               

               
               531-635, + strand, RNAz p=0.983255

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-500, - strand, RNAz p=0.939329
               

               
               531-635, + strand, RNAz p=0.983255

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               142-635, gnl|bosTau2|chr5 (45646499-45647008)
               

               
               142-635, gnl|Hg17|chr22 (35069802-35069386)
               


               
               350-505, gnl|bosTau2|chr10 (13711787-13711632)
               

               
               350-505, gnl|Hg17|chr14 (22944821-22944666)
               

               
               350-505, gnl|Mm7|chr14 (49830627-49830472)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-635, gnl|bosTau2|chr5 (45646499-45647008)
               

               
               142-635, gnl|Hg17|chr22 (35069802-35069386)
               


               
               350-505, gnl|bosTau2|chr10 (13711787-13711632)
               

               
               350-505, gnl|Hg17|chr14 (22944821-22944666)
               

               
               350-505, gnl|Mm7|chr14 (49830627-49830472)

	142-500, - strand, RNAz p=0.939329
	531-635, + strand, RNAz p=0.983255

	142-635, gnl\|bosTau2\|chr5 (45646499-45647008)
	142-635, gnl\|Hg17\|chr22 (35069802-35069386)

	350-505, gnl\|bosTau2\|chr10 (13711787-13711632)
	350-505, gnl\|Hg17\|chr14 (22944821-22944666)
	350-505, gnl\|Mm7\|chr14 (49830627-49830472)