Non-Coding RNA Search

Ss1.1-Ova1-OVRM10084B08.5

Sequence:


               
               ACTGCCTCACCGAAGACACAGTGGAGGTGAGCCAAGGAGAAGGGGAAAAGGAGAAGAGCT
ACCCCGCTTCACCTCCTCCTGTGAGCAAGGGCATTGAGGTGACCAGCTGGACAGCGGATG
CCTCCAGGGGCCTGCGGTTCATCGTGTATGACTTAGCTGGGGATGAAAGTTACGAGGTGA
TCCAGCCCTTCTTCCTCTCCCCGGGGGCTCTTTATGTGCTGGTGGTGAACTTGGCCACCT
ATGAGCCACTGCGCTTTCCCACCACTGTGGGCTCCTTCTTGCATCGGGTGGGGGCCCGGG
TGCCTCATGCCGTGGTGTGCATTGTAGGCACGCATGCCGACCTCTGCGGGGAACAGGAGC
TGGAGGAGAAGTGTTTGGACATTCACCGCCAGATTGCCCTTCAGGAGAAGCGTGACGCCG
AGGGCCTAAGCCGTCTAGCCCAGGTGGTAGATGAGGCACTGGCCCGGGACTTCGAGCTCC
GCTCTGCCAGCCCCCATGCTGCGTACTATGGCGTTTCAGACAAGAACCTTCGGCGGCGCA
AGGCCCACTTTCAGTACCTGCTCAACCACCGGCTGCAGATCCTCTCCCCCGTGCTGCCCG
TTAGCTGCAGGGATCCCTGCCAGTTAAAGCGCCTTCGGGACAAACTGCTTTCAGTTGCCG
AGCACCGGGAAATCTTCCCCAACTTACACAGAGTACTGCCCAGGTCCTGGCAGGTGCTGG
AGGAGCTGCACTTCCAGCCCCCTCAGGCACAGCGGCTCTGGCTCAGCTGGTGGGACTCAG
CTCGCCTGGGCCTGCAGGCCGGGCTGACCGAGGACCGACTGCAGAGTGCTCTCTCCTACC
TGCACGAGAGTGGCAAGCTGCTCTACTTTGAGGACAGCCCGGCTCTCAAGGAGCATGTCT
TCCACAACCTGTCCCGCCTAATCGACATCCTCAATGTTTTCTTCCAGAGGGATCCTTCCT
TGCTGCTGCATAAGCTGCTCCTAGGGACCAATGGTGAGGCTGAGGGTGAGGGCGAAAGCT
CCCCACTGATGGCACTGCACGCCCCGAGCCAGGACACGCTGCGGGCCACCCAGCTTCATC
ATTATGTGGAGGGCTTTCTGCTGCATGGGCTCCTGCCAGCCCATGTCATCCGGTTGCTGT
TGAAGCCTCATGTCCAGGCTCAGCAGGACCTGCAGCTGCTGCTGGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGCCTCACCGAAGACACAGTGGAGGTGAGCCAAGGAGAAGGGGAAAAGGAGAAGAGCT
ACCCCGCTTCACCTCCTCCTGTGAGCAAGGGCATTGAGGTGACCAGCTGGACAGCGGATG
CCTCCAGGGGCCTGCGGTTCATCGTGTATGACTTAGCTGGGGATGAAAGTTACGAGGTGA
TCCAGCCCTTCTTCCTCTCCCCGGGGGCTCTTTATGTGCTGGTGGTGAACTTGGCCACCT
ATGAGCCACTGCGCTTTCCCACCACTGTGGGCTCCTTCTTGCATCGGGTGGGGGCCCGGG
TGCCTCATGCCGTGGTGTGCATTGTAGGCACGCATGCCGACCTCTGCGGGGAACAGGAGC
TGGAGGAGAAGTGTTTGGACATTCACCGCCAGATTGCCCTTCAGGAGAAGCGTGACGCCG
AGGGCCTAAGCCGTCTAGCCCAGGTGGTAGATGAGGCACTGGCCCGGGACTTCGAGCTCC
GCTCTGCCAGCCCCCATGCTGCGTACTATGGCGTTTCAGACAAGAACCTTCGGCGGCGCA
AGGCCCACTTTCAGTACCTGCTCAACCACCGGCTGCAGATCCTCTCCCCCGTGCTGCCCG
TTAGCTGCAGGGATCCCTGCCAGTTAAAGCGCCTTCGGGACAAACTGCTTTCAGTTGCCG
AGCACCGGGAAATCTTCCCCAACTTACACAGAGTACTGCCCAGGTCCTGGCAGGTGCTGG
AGGAGCTGCACTTCCAGCCCCCTCAGGCACAGCGGCTCTGGCTCAGCTGGTGGGACTCAG
CTCGCCTGGGCCTGCAGGCCGGGCTGACCGAGGACCGACTGCAGAGTGCTCTCTCCTACC
TGCACGAGAGTGGCAAGCTGCTCTACTTTGAGGACAGCCCGGCTCTCAAGGAGCATGTCT
TCCACAACCTGTCCCGCCTAATCGACATCCTCAATGTTTTCTTCCAGAGGGATCCTTCCT
TGCTGCTGCATAAGCTGCTCCTAGGGACCAATGGTGAGGCTGAGGGTGAGGGCGAAAGCT
CCCCACTGATGGCACTGCACGCCCCGAGCCAGGACACGCTGCGGGCCACCCAGCTTCATC
ATTATGTGGAGGGCTTTCTGCTGCATGGGCTCCTGCCAGCCCATGTCATCCGGTTGCTGT
TGAAGCCTCATGTCCAGGCTCAGCAGGACCTGCAGCTGCTGCTGGAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40225967|gb|AAH14226.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40225967|gb|AAH14226.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               280-399, - strand, RNAz p=0.610613
               

               
               1071-1188, + strand, RNAz p=0.79087

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-399, - strand, RNAz p=0.610613
               

               
               1071-1188, + strand, RNAz p=0.79087

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1188, gnl|bosTau2|chr27 (15231824-15233017)
               

               
               1-1188, gnl|Hg17|chr8 (8786699-8785512)
               

               
               1-1188, gnl|Mm7|chr8 (34354998-34356185)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1188, gnl|bosTau2|chr27 (15231824-15233017)
               

               
               1-1188, gnl|Hg17|chr8 (8786699-8785512)
               

               
               1-1188, gnl|Mm7|chr8 (34354998-34356185)

	280-399, - strand, RNAz p=0.610613
	1071-1188, + strand, RNAz p=0.79087

	1-1188, gnl\|bosTau2\|chr27 (15231824-15233017)
	1-1188, gnl\|Hg17\|chr8 (8786699-8785512)
	1-1188, gnl\|Mm7\|chr8 (34354998-34356185)