Non-Coding RNA Search

Ss1.1-Ova1-OVRM10085F04.5

Sequence:


               
               ACTGAGCCGCCTAAGAAGCCGCGGCGGCGGGCCTCCCAGCCGGAAGCAACCGCCGAGCCT
TAGCCTCACCGCAGCCACTAGGGCTCCGGGCCGGCGAAATGCCTCTGTTCACCGCCAACC
CCTTCGAGCAAGACGTGGGTAAGTGCTGGGTCTGGCCCCGGGCTGTTGTTTGCTGTGCTG
GAAAGTGGGCGGGGGCGACTCCGGGGACTGGAAAGCGGCAGAGGGAGCGAAGGGGGTGGC
CCGCTGCCTGGCAGCTGGGATTTTTCAGGGGGCAGCTTTCGTGCGTGGTAGCAAGCAGCC
TCAGGAGGGTGTCCAGTCCTCCTGCAGCTGAGGACCTGGAAAGAGGGCCTTTCCCCACTC
CAGGCGCAGGAATAGGGAACAGCCTGGGGCTCCCTGGAGACTTGACTGATGAAGCAGTTG
CAGAGTTGAGGACGCAAACTTCCAATTCTCTGTAGAGCTCGTTGAGTCTAGTGTCACCCC
CTCCCTCCACTCCCCCGCACTTAAGGAAGGATGCAAGAGTCCAGACCTGCTTAGAGACTC
CAGCTTGCCCCCATTTAACCGGAAGAACCTATTTCACCTGGCTTATGTACACATGCATCC
AGGCCCTGATAGAACCAAGCACGGCTTCCGGATTTCTTTATGAGAGTTGGAAGTGTTACT
CTATCGTGGATGGTGCAAGTGCTGTAAGAGGCTTTGTCTCAGCGTATGAAAAGGAAAATC
CCAGGTTCTCCAAACAGTCCAGGACAACTGATCTTTTACTTATTTTGGCATCGTCGGAAT
GCTGAGGACTCAGTGACTATGGAGTGAGGAAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGAGCCGCCTAAGAAGCCGCGGCGGCGGGCCTCCCAGCCGGAAGCAACCGCCGAGCCT
TAGCCTCACCGCAGCCACTAGGGCTCCGGGCCGGCGAAATGCCTCTGTTCACCGCCAACC
CCTTCGAGCAAGACGTGGGTAAGTGCTGGGTCTGGCCCCGGGCTGTTGTTTGCTGTGCTG
GAAAGTGGGCGGGGGCGACTCCGGGGACTGGAAAGCGGCAGAGGGAGCGAAGGGGGTGGC
CCGCTGCCTGGCAGCTGGGATTTTTCAGGGGGCAGCTTTCGTGCGTGGTAGCAAGCAGCC
TCAGGAGGGTGTCCAGTCCTCCTGCAGCTGAGGACCTGGAAAGAGGGCCTTTCCCCACTC
CAGGCGCAGGAATAGGGAACAGCCTGGGGCTCCCTGGAGACTTGACTGATGAAGCAGTTG
CAGAGTTGAGGACGCAAACTTCCAATTCTCTGTAGAGCTCGTTGAGTCTAGTGTCACCCC
CTCCCTCCACTCCCCCGCACTTAAGGAAGGATGCAAGAGTCCAGACCTGCTTAGAGACTC
CAGCTTGCCCCCATTTAACCGGAAGAACCTATTTCACCTGGCTTATGTACACATGCATCC
AGGCCCTGATAGAACCAAGCACGGCTTCCGGATTTCTTTATGAGAGTTGGAAGTGTTACT
CTATCGTGGATGGTGCAAGTGCTGTAAGAGGCTTTGTCTCAGCGTATGAAAAGGAAAATC
CCAGGTTCTCCAAACAGTCCAGGACAACTGATCTTTTACTTATTTTGGCATCGTCGGAAT
GCTGAGGACTCAGTGACTATGGAGTGAGGAAAAGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               152-254, - strand, RNAz p=0.52938
               

               
               372-489, + strand, RNAz p=0.992601

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-254, - strand, RNAz p=0.52938
               

               
               372-489, + strand, RNAz p=0.992601

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               5-612, gnl|bosTau2|chr2 (29126326-29126953)
               

               
               5-612, gnl|Hg17|chr2 (152857755-152857115)
               

               
               5-612, gnl|Mm7|chr2 (52749496-52748967)
               


               
               637-775, gnl|bosTau2|chr2 (29126956-29127094)
               

               
               637-775, gnl|Hg17|chr2 (152857101-152856938)
               

               
               637-775, gnl|Mm7|chr2 (52748966-52748835)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-612, gnl|bosTau2|chr2 (29126326-29126953)
               

               
               5-612, gnl|Hg17|chr2 (152857755-152857115)
               

               
               5-612, gnl|Mm7|chr2 (52749496-52748967)
               


               
               637-775, gnl|bosTau2|chr2 (29126956-29127094)
               

               
               637-775, gnl|Hg17|chr2 (152857101-152856938)
               

               
               637-775, gnl|Mm7|chr2 (52748966-52748835)

	152-254, - strand, RNAz p=0.52938
	372-489, + strand, RNAz p=0.992601

	5-612, gnl\|bosTau2\|chr2 (29126326-29126953)
	5-612, gnl\|Hg17\|chr2 (152857755-152857115)
	5-612, gnl\|Mm7\|chr2 (52749496-52748967)

	637-775, gnl\|bosTau2\|chr2 (29126956-29127094)
	637-775, gnl\|Hg17\|chr2 (152857101-152856938)
	637-775, gnl\|Mm7\|chr2 (52748966-52748835)