Non-Coding RNA Search

Ss1.1-Ova1-OVRM10086D08.5

Sequence:


               
               TGGTTTTCCCCACCAAAAAGCGGCTAGCCGGCTGTAGGAGGCGACGAAAAGTTCAGGGCG
GACTGGCAAAAGGCGGTGCGATTGCAGAGGTGGAGCCCCGAGGTGACCAGCGCCGCTGAG
GAACGCCCCCCCCGCCCCAGTGGAAGTGGTTCAGCCCGAGGACTTTTCATTCATAAAAAG
AAAAGACTCCGCGAGGAGCGAGTGAGTCAGAACCAGAGCCGCCGACACGGACCCCACAGA
GCAGCCAGCCCAGGGCATGTTCCGAGACTTCGGGGAACCGGGACCGAGCTCCGGGGCCGG
AGGTGCGTACGGCGGCCCGGCGCAGCCCCCGGTGACAGGCCAGCAGAAGTTCCACCTCGT
GCCAAGCATCAACGCTGTGAGTGGCAGCCAGGAGCTGCAGTGGATGGTACAGCCTCACTT
CCTGGGACCCAGCAGCTACCCCAGGCCTCTGGCGTACCCCCAGTACAGTCCCCCACAACC
CCGGCCGGGAGTCATCCGGGCTCTGGGGCCAACTCCGGCAGTGCGTCGTCGGCACTGTGA
ACAGATCAGCCCCGAGGAGGAGGAACGCCGTCGAGTGAGGCGCGAGCGGAACAAGCTAGC
CGCCGCCAAGTGCAGGAACCGAAGGAAAGAACTGACCGACTTCCTGCAGTCGGAGACCGA
CAAACTGGAGGACGAGAAAGCCGGGCTGCAGCGAGAGATTGAGGAGCTGCAGAAGCAGAA
GGAGCGCCTGGAGCTGGTGCTGGAAGCCCACCGGCCCATCTGCAAAATCCCAGAAGGGGC
CAGGGAGAGCGACACCAGCGGCACAGGCGGTACCAGTGGCACCAGCAGCCCGCCAGACCC
TTCCCGCCCTGTGCCTTGTATCTCCCTTTCCCCTGGGCCTGTGCTTGAACCGGAAGCATT
GCACACTCCCACGCTCATGACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTTTTCCCCACCAAAAAGCGGCTAGCCGGCTGTAGGAGGCGACGAAAAGTTCAGGGCG
GACTGGCAAAAGGCGGTGCGATTGCAGAGGTGGAGCCCCGAGGTGACCAGCGCCGCTGAG
GAACGCCCCCCCCGCCCCAGTGGAAGTGGTTCAGCCCGAGGACTTTTCATTCATAAAAAG
AAAAGACTCCGCGAGGAGCGAGTGAGTCAGAACCAGAGCCGCCGACACGGACCCCACAGA
GCAGCCAGCCCAGGGCATGTTCCGAGACTTCGGGGAACCGGGACCGAGCTCCGGGGCCGG
AGGTGCGTACGGCGGCCCGGCGCAGCCCCCGGTGACAGGCCAGCAGAAGTTCCACCTCGT
GCCAAGCATCAACGCTGTGAGTGGCAGCCAGGAGCTGCAGTGGATGGTACAGCCTCACTT
CCTGGGACCCAGCAGCTACCCCAGGCCTCTGGCGTACCCCCAGTACAGTCCCCCACAACC
CCGGCCGGGAGTCATCCGGGCTCTGGGGCCAACTCCGGCAGTGCGTCGTCGGCACTGTGA
ACAGATCAGCCCCGAGGAGGAGGAACGCCGTCGAGTGAGGCGCGAGCGGAACAAGCTAGC
CGCCGCCAAGTGCAGGAACCGAAGGAAAGAACTGACCGACTTCCTGCAGTCGGAGACCGA
CAAACTGGAGGACGAGAAAGCCGGGCTGCAGCGAGAGATTGAGGAGCTGCAGAAGCAGAA
GGAGCGCCTGGAGCTGGTGCTGGAAGCCCACCGGCCCATCTGCAAAATCCCAGAAGGGGC
CAGGGAGAGCGACACCAGCGGCACAGGCGGTACCAGTGGCACCAGCAGCCCGCCAGACCC
TTCCCGCCCTGTGCCTTGTATCTCCCTTTCCCCTGGGCCTGTGCTTGAACCGGAAGCATT
GCACACTCCCACGCTCATGACCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61833751|ref|XP_609882.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61833751|ref|XP_609882.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               652-770, + strand, RNAz p=0.910814

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               652-770, + strand, RNAz p=0.910814

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-346, gnl|bosTau2|chr29 (30512954-30512595)
               

               
               4-346, gnl|Hg17|chr11 (65424629-65424288)
               

               
               4-346, gnl|Mm7|chr19 (5342500-5342861)
               


               
               652-924, gnl|bosTau2|chr29 (30507666-30507394)
               

               
               652-924, gnl|Hg17|chr11 (65417344-65417081)
               

               
               652-924, gnl|Mm7|chr19 (5349697-5349966)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-346, gnl|bosTau2|chr29 (30512954-30512595)
               

               
               4-346, gnl|Hg17|chr11 (65424629-65424288)
               

               
               4-346, gnl|Mm7|chr19 (5342500-5342861)
               


               
               652-924, gnl|bosTau2|chr29 (30507666-30507394)
               

               
               652-924, gnl|Hg17|chr11 (65417344-65417081)
               

               
               652-924, gnl|Mm7|chr19 (5349697-5349966)

	4-346, gnl\|bosTau2\|chr29 (30512954-30512595)
	4-346, gnl\|Hg17\|chr11 (65424629-65424288)
	4-346, gnl\|Mm7\|chr19 (5342500-5342861)

	652-924, gnl\|bosTau2\|chr29 (30507666-30507394)
	652-924, gnl\|Hg17\|chr11 (65417344-65417081)
	652-924, gnl\|Mm7\|chr19 (5349697-5349966)