Non-Coding RNA Search

Ss1.1-Ova1-OVRM10087G11.5

Sequence:


               
               CACTGCATCCCTCGGCAGCCCGGGTGTCCTCTCTGTCCGCTGTGTCTGCGCCGCCCCTGC
CGCTGCCGCTGCCCCCCACTCCACGCGGGAGACGCCAACTCCACTCGGGAGACTCCGCGA
GGTGGTGGTTGGAGCCCTGCAAAGAGCTCGTGAGCACCCGGTCCTGCCACCCGAGGCCGC
CCTGTCACCCAGCCCCTGCTGCCGCCGCCTAGAGCCATGCGCTGCGTCCTTCACGGCATC
CCGGCCCTGGGGCTGGCGCTGCTGGTCTGCGGGGCGCAAGGCTTTTTCCTGCCCAACGTC
ACGCACTTGGAGAAGCTGCTCAGCAAATACCAGCAGGACAGGCCCCACTCCCGGGCGCGG
AGGGCCATCCCCCGGGTGGACCAGGAGGAGATCCTTATGCTGCACAACAAGCTGCGAGGC
CAGGTGTCCCCGCCGGCCTCCAACATGGAGCACATGACCTGGGATGAAGAGCTGGCAAGG
TCGGCGGCGGCCTGGGCCCAGGAGTGTATCTGGGAGCACGGGCCCACCAGCCTGCTGGTG
TCCATTGGGCAGAACCTGGCCGTGCACTGGGGCAGGTACCGCTCTCCCGGCTTCCACGTG
CAGTCCTGGTACGACGAGGTGAAGGACTACACCTACCCCTACCCCCATGAGTGCAACCCC
TGGTGTCCAGAGCGGTGCTCGGGAGCCATGTGTACCCACTACACGCAGATAGTCTGGGCC
ACCACCACCAAGATCGGCTGTGCTGTGAACACCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTGCATCCCTCGGCAGCCCGGGTGTCCTCTCTGTCCGCTGTGTCTGCGCCGCCCCTGC
CGCTGCCGCTGCCCCCCACTCCACGCGGGAGACGCCAACTCCACTCGGGAGACTCCGCGA
GGTGGTGGTTGGAGCCCTGCAAAGAGCTCGTGAGCACCCGGTCCTGCCACCCGAGGCCGC
CCTGTCACCCAGCCCCTGCTGCCGCCGCCTAGAGCCATGCGCTGCGTCCTTCACGGCATC
CCGGCCCTGGGGCTGGCGCTGCTGGTCTGCGGGGCGCAAGGCTTTTTCCTGCCCAACGTC
ACGCACTTGGAGAAGCTGCTCAGCAAATACCAGCAGGACAGGCCCCACTCCCGGGCGCGG
AGGGCCATCCCCCGGGTGGACCAGGAGGAGATCCTTATGCTGCACAACAAGCTGCGAGGC
CAGGTGTCCCCGCCGGCCTCCAACATGGAGCACATGACCTGGGATGAAGAGCTGGCAAGG
TCGGCGGCGGCCTGGGCCCAGGAGTGTATCTGGGAGCACGGGCCCACCAGCCTGCTGGTG
TCCATTGGGCAGAACCTGGCCGTGCACTGGGGCAGGTACCGCTCTCCCGGCTTCCACGTG
CAGTCCTGGTACGACGAGGTGAAGGACTACACCTACCCCTACCCCCATGAGTGCAACCCC
TGGTGTCCAGAGCGGTGCTCGGGAGCCATGTGTACCCACTACACGCAGATAGTCTGGGCC
ACCACCACCAAGATCGGCTGTGCTGTGAACACCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14043394|gb|AAH07689.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14043394|gb|AAH07689.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               594-711, - strand, RNAz p=0.72412

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               594-711, - strand, RNAz p=0.72412

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               143-502, gnl|bosTau2|chr18 (11887263-11886903)
               

               
               143-502, gnl|Hg17|chr16 (83429527-83429899)
               

               
               143-502, gnl|Mm7|chr8 (118646135-118646495)
               


               
               572-711, gnl|bosTau2|chr18 (11882191-11882052)
               

               
               572-711, gnl|Hg17|chr16 (83440488-83440627)
               

               
               572-711, gnl|Mm7|chr8 (118650973-118651112)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-502, gnl|bosTau2|chr18 (11887263-11886903)
               

               
               143-502, gnl|Hg17|chr16 (83429527-83429899)
               

               
               143-502, gnl|Mm7|chr8 (118646135-118646495)
               


               
               572-711, gnl|bosTau2|chr18 (11882191-11882052)
               

               
               572-711, gnl|Hg17|chr16 (83440488-83440627)
               

               
               572-711, gnl|Mm7|chr8 (118650973-118651112)

	143-502, gnl\|bosTau2\|chr18 (11887263-11886903)
	143-502, gnl\|Hg17\|chr16 (83429527-83429899)
	143-502, gnl\|Mm7\|chr8 (118646135-118646495)

	572-711, gnl\|bosTau2\|chr18 (11882191-11882052)
	572-711, gnl\|Hg17\|chr16 (83440488-83440627)
	572-711, gnl\|Mm7\|chr8 (118650973-118651112)