Non-Coding RNA Search

Ss1.1-Ova1-OVRM10088C10.5

Sequence:


               
               AATGGCTGCCGCTGCTACCATGGCGGCAGCCGCCCGGGAGCTGGTGTTGCGGTCCGGGGC
CTCAGATATGGAGGAGGAGGAGGGCCCACTGGTGAGGACGCAGGGCTGTTTCTCCTCCAG
AGTCTCGTCCGGTCTTCTCACGTCAGAAAGGTCTGGGCTGGGTTTCGCGCAAGGTTGGGA
GCTCGGCTGCTACCGGTGATGCTGCCTGGTCTGGCTCTCCATACCCCTCCCCGGATCGGA
CCTGGACCAAAGTGGGGACTAGAATGGCTGATACTTAGGTTCTGGGGCCACAGTTTCAGT
TAAACTCCAGATATTTGCGCAGGATAGAGAAGCGGTGTAGAGTAAATG------------
------------------------------------------------------------
------------------------TCTTAACACTTATAAAGTGAAAAAATAAGACTTACT
GTAGAGGTTGTCGGTTAGGATTAGGTGAATGTAGGATGACACCTGGCACGATGGTGAACA
CTGTGTTAACTGACATTTCTAGAAAGGCTGGAGCTCCCCACGGGGATTGTAACAGAACAT
CTAAGATAGAAGGAGTCTGGAGACCCTAAGTTCAACTGCAAGTTCTGCTCTGTCCCTGCA
TCTCCTAATTTTCCTCATTTGGTCACCTCTGTGGGTTTGCTGGCTCCTTGTCATATTCCC
TACCCATCAGCCCCAATGAGTAGATTGGGACAATATGAGATTTTGGAATTTTTTGGACTC
AGCATTTCTCTCTGGTTTCCCAGTGAAAGTCCTCTCTCCCCATTATATTTTGTTCTCCCC
CTCCCTTTCCCATTAACCTGCCCCTCTCCAGGGGGGTGGTCCAGGTCTCCAGGAGCCACT
GCAACTTGGAGAGTTGGACCTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGCTGCCGCTGCTACCATGGCGGCAGCCGCCCGGGAGCTGGTGTTGCGGTCCGGGGC
CTCAGATATGGAGGAGGAGGAGGGCCCACTGGTGAGGACGCAGGGCTGTTTCTCCTCCAG
AGTCTCGTCCGGTCTTCTCACGTCAGAAAGGTCTGGGCTGGGTTTCGCGCAAGGTTGGGA
GCTCGGCTGCTACCGGTGATGCTGCCTGGTCTGGCTCTCCATACCCCTCCCCGGATCGGA
CCTGGACCAAAGTGGGGACTAGAATGGCTGATACTTAGGTTCTGGGGCCACAGTTTCAGT
TAAACTCCAGATATTTGCGCAGGATAGAGAAGCGGTGTAGAGTAAATG------------
------------------------------------------------------------
------------------------TCTTAACACTTATAAAGTGAAAAAATAAGACTTACT
GTAGAGGTTGTCGGTTAGGATTAGGTGAATGTAGGATGACACCTGGCACGATGGTGAACA
CTGTGTTAACTGACATTTCTAGAAAGGCTGGAGCTCCCCACGGGGATTGTAACAGAACAT
CTAAGATAGAAGGAGTCTGGAGACCCTAAGTTCAACTGCAAGTTCTGCTCTGTCCCTGCA
TCTCCTAATTTTCCTCATTTGGTCACCTCTGTGGGTTTGCTGGCTCCTTGTCATATTCCC
TACCCATCAGCCCCAATGAGTAGATTGGGACAATATGAGATTTTGGAATTTTTTGGACTC
AGCATTTCTCTCTGGTTTCCCAGTGAAAGTCCTCTCTCCCCATTATATTTTGTTCTCCCC
CTCCCTTTCCCATTAACCTGCCCCTCTCCAGGGGGGTGGTCCAGGTCTCCAGGAGCCACT
GCAACTTGGAGAGTTGGACCTCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.854578

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.854578

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK093057, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK093057, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-352, gnl|bosTau2|chr23 (5809512-5809162)
               

               
               1-352, gnl|Hg17|chr6 (33347431-33347071)
               

               
               1-352, gnl|Mm7|chr17 (32034123-32034450)
               


               
               511-721, gnl|bosTau2|chr23 (5808694-5808477)
               

               
               511-721, gnl|Hg17|chr6 (33346805-33346128)
               

               
               511-721, gnl|Mm7|chr17 (32034691-32034870)
               


               
               724-828, gnl|bosTau2|chr23 (5808449-5808345)
               

               
               724-828, gnl|Hg17|chr6 (33346101-33345986)
               

               
               724-828, gnl|Mm7|chr17 (32034897-32035013)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-352, gnl|bosTau2|chr23 (5809512-5809162)
               

               
               1-352, gnl|Hg17|chr6 (33347431-33347071)
               

               
               1-352, gnl|Mm7|chr17 (32034123-32034450)
               


               
               511-721, gnl|bosTau2|chr23 (5808694-5808477)
               

               
               511-721, gnl|Hg17|chr6 (33346805-33346128)
               

               
               511-721, gnl|Mm7|chr17 (32034691-32034870)
               


               
               724-828, gnl|bosTau2|chr23 (5808449-5808345)
               

               
               724-828, gnl|Hg17|chr6 (33346101-33345986)
               

               
               724-828, gnl|Mm7|chr17 (32034897-32035013)

	1-352, gnl\|bosTau2\|chr23 (5809512-5809162)
	1-352, gnl\|Hg17\|chr6 (33347431-33347071)
	1-352, gnl\|Mm7\|chr17 (32034123-32034450)

	511-721, gnl\|bosTau2\|chr23 (5808694-5808477)
	511-721, gnl\|Hg17\|chr6 (33346805-33346128)
	511-721, gnl\|Mm7\|chr17 (32034691-32034870)

	724-828, gnl\|bosTau2\|chr23 (5808449-5808345)
	724-828, gnl\|Hg17\|chr6 (33346101-33345986)
	724-828, gnl\|Mm7\|chr17 (32034897-32035013)