Non-Coding RNA Search

Ss1.1-Ova1-OVRM10088G07.5

Sequence:


               
               TATTGTGACTGTCGGGCCGTGGCCCCGGATGTTGCGGCTGCCGGGGGGAGATGGCGGAGG
CAGAGGGGGTAGTTGTGGCCCCAGGCCCTGCTTCGGGGCAGAGTTCCAGAGGCCGCCGCA
CTATGTCGGGCTCCTGCGAGCGGGACCAGCAGGTTGAGGCGGCGCAGCGGGCCCTGGTGG
AGGTGCTGGGGCCTTACGAGCCTCTGCTGAACCGGGTGCAGGCAGCCCTGGTGTGGGAGC
GGCCAGCCAGGAGCGCCCTGTGGTGCCTGGGGCTGAACGCGGCTTTCTGGTGAGAGAACT
GGATCCTCGGAAACCCTTCGAGGCGCGAAATCATCAGGTTTCTCTAGGGCTTTATCTCTC
ACCTCTCCTGTTTCTTCGCTGCACTGACTCCTTCCTGTACCTGCCTGATTTCTGCCTCAA
CTCCTTCCACTCCGTCCCGCGTGCGGCTTTGGCACCGCAGTTCTCCCCAGAGCCTTCCAG
TGACCAGGAGCTTCTAGTAACCTCTTGAGCCGCTCGCAGTGAGTGAGGGCGCCTCGTTTT
AGCCAGGGGAAAACTGTGTTCCTTTAAGGCCATCATTTCTCTTCTCTTGTTTGCTCAAAG
GTGCTTTGAAGATTGTCTCCAGAGATTTTAGTAGTTATTATTTGGATAGATGTGTGAGGC
GTGAGATCTTCAGAACGTATGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTGTGACTGTCGGGCCGTGGCCCCGGATGTTGCGGCTGCCGGGGGGAGATGGCGGAGG
CAGAGGGGGTAGTTGTGGCCCCAGGCCCTGCTTCGGGGCAGAGTTCCAGAGGCCGCCGCA
CTATGTCGGGCTCCTGCGAGCGGGACCAGCAGGTTGAGGCGGCGCAGCGGGCCCTGGTGG
AGGTGCTGGGGCCTTACGAGCCTCTGCTGAACCGGGTGCAGGCAGCCCTGGTGTGGGAGC
GGCCAGCCAGGAGCGCCCTGTGGTGCCTGGGGCTGAACGCGGCTTTCTGGTGAGAGAACT
GGATCCTCGGAAACCCTTCGAGGCGCGAAATCATCAGGTTTCTCTAGGGCTTTATCTCTC
ACCTCTCCTGTTTCTTCGCTGCACTGACTCCTTCCTGTACCTGCCTGATTTCTGCCTCAA
CTCCTTCCACTCCGTCCCGCGTGCGGCTTTGGCACCGCAGTTCTCCCCAGAGCCTTCCAG
TGACCAGGAGCTTCTAGTAACCTCTTGAGCCGCTCGCAGTGAGTGAGGGCGCCTCGTTTT
AGCCAGGGGAAAACTGTGTTCCTTTAAGGCCATCATTTCTCTTCTCTTGTTTGCTCAAAG
GTGCTTTGAAGATTGTCTCCAGAGATTTTAGTAGTTATTATTTGGATAGATGTGTGAGGC
GTGAGATCTTCAGAACGTATGCAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               118-237, - strand, RNAz p=0.515608
               

               
               278-422, + strand, RNAz p=0.945887

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-237, - strand, RNAz p=0.515608
               

               
               278-422, + strand, RNAz p=0.945887

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-481, gnl|bosTau2|chr19 (38784069-38784546)
               

               
               1-481, gnl|Hg17|chr17 (38014919-38014438)
               

               
               1-481, gnl|Mm7|chr11 (101228869-101228372)
               


               
               485-684, gnl|bosTau2|chr19 (38784589-38784771)
               

               
               485-684, gnl|canFam2|chr9 (23681946-23681632)
               

               
               485-684, gnl|hg17|chr17 (38014180-38014484)
               

               
               485-684, gnl|Hg17|chr17 (38014389-38014196)
               

               
               485-684, gnl|loxAfr1|scaffold_24689 (9523-9791)
               

               
               485-684, gnl|mm7|chr11 (101228152-101228422)
               

               
               485-684, gnl|Mm7|chr11 (101228345-101228169)
               

               
               485-684, gnl|oryCun1|scaffold_196502 (4827-4527)
               

               
               485-684, gnl|panTro1|chr19 (41229213-41229517)
               

               
               485-684, gnl|rheMac2|chr16 (52731276-52731579)
               

               
               485-684, gnl|rn3|chr10 (90151187-90151492)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-481, gnl|bosTau2|chr19 (38784069-38784546)
               

               
               1-481, gnl|Hg17|chr17 (38014919-38014438)
               

               
               1-481, gnl|Mm7|chr11 (101228869-101228372)
               


               
               485-684, gnl|bosTau2|chr19 (38784589-38784771)
               

               
               485-684, gnl|canFam2|chr9 (23681946-23681632)
               

               
               485-684, gnl|hg17|chr17 (38014180-38014484)
               

               
               485-684, gnl|Hg17|chr17 (38014389-38014196)
               

               
               485-684, gnl|loxAfr1|scaffold_24689 (9523-9791)
               

               
               485-684, gnl|mm7|chr11 (101228152-101228422)
               

               
               485-684, gnl|Mm7|chr11 (101228345-101228169)
               

               
               485-684, gnl|oryCun1|scaffold_196502 (4827-4527)
               

               
               485-684, gnl|panTro1|chr19 (41229213-41229517)
               

               
               485-684, gnl|rheMac2|chr16 (52731276-52731579)
               

               
               485-684, gnl|rn3|chr10 (90151187-90151492)

	118-237, - strand, RNAz p=0.515608
	278-422, + strand, RNAz p=0.945887

	1-481, gnl\|bosTau2\|chr19 (38784069-38784546)
	1-481, gnl\|Hg17\|chr17 (38014919-38014438)
	1-481, gnl\|Mm7\|chr11 (101228869-101228372)

	485-684, gnl\|bosTau2\|chr19 (38784589-38784771)
	485-684, gnl\|canFam2\|chr9 (23681946-23681632)
	485-684, gnl\|hg17\|chr17 (38014180-38014484)
	485-684, gnl\|Hg17\|chr17 (38014389-38014196)
	485-684, gnl\|loxAfr1\|scaffold_24689 (9523-9791)
	485-684, gnl\|mm7\|chr11 (101228152-101228422)
	485-684, gnl\|Mm7\|chr11 (101228345-101228169)
	485-684, gnl\|oryCun1\|scaffold_196502 (4827-4527)
	485-684, gnl\|panTro1\|chr19 (41229213-41229517)
	485-684, gnl\|rheMac2\|chr16 (52731276-52731579)
	485-684, gnl\|rn3\|chr10 (90151187-90151492)