Non-Coding RNA Search

Ss1.1-Ova1-OVRM10092C07.5

Sequence:


               
               ATTTTGTGCAGTCGCTGGGAAGGAGGGAGACGCCTAAACCGCGGCACTGCCGGGTTTGAG
CGTAGCCAAACCTACCCGCTGCTTTCATAACCCCGATTCTCTGTGTTTTGCTCCCGTCTC
CGACGAGAGAGGCGGCGACGGTGGCGTCTGCGACGGGAGACAGCGCGTCGGAGCGAGAGA
GCGCCGCGCCTGCCGCCGCCCCAACAGCGGAGGCGCCGCCGCCATCGGTCGTCACCAGAC
CGGAGCCGCAGGCCCTCCCGAGCCCGGCCATCCGTGCCCCGCTCCCAGATCTCTATCCAT
TTGGGACCATGCGCGGAGGCGGCTTTGGGGACCGGGACCGGGATCGTGACCGTGGAGGAT
TTGGAGCAAGAGGTGGTGGCGGCCTTCCCCCAAAGAAATTTGGTAATCCTGGGGAGCGTT
TACGTAAAAAGAAGTGGGATTTGAGTGAGCTCCCTAAGTTTGAGAAGAATTTTTATGTTG
AACATCCAGAAGTGGCAAGGTTGACTCCGTATGAGGTTGATGAACTACGCCGAAAGAAAG
AGATTACAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGTGCAGTCGCTGGGAAGGAGGGAGACGCCTAAACCGCGGCACTGCCGGGTTTGAG
CGTAGCCAAACCTACCCGCTGCTTTCATAACCCCGATTCTCTGTGTTTTGCTCCCGTCTC
CGACGAGAGAGGCGGCGACGGTGGCGTCTGCGACGGGAGACAGCGCGTCGGAGCGAGAGA
GCGCCGCGCCTGCCGCCGCCCCAACAGCGGAGGCGCCGCCGCCATCGGTCGTCACCAGAC
CGGAGCCGCAGGCCCTCCCGAGCCCGGCCATCCGTGCCCCGCTCCCAGATCTCTATCCAT
TTGGGACCATGCGCGGAGGCGGCTTTGGGGACCGGGACCGGGATCGTGACCGTGGAGGAT
TTGGAGCAAGAGGTGGTGGCGGCCTTCCCCCAAAGAAATTTGGTAATCCTGGGGAGCGTT
TACGTAAAAAGAAGTGGGATTTGAGTGAGCTCCCTAAGTTTGAGAAGAATTTTTATGTTG
AACATCCAGAAGTGGCAAGGTTGACTCCGTATGAGGTTGATGAACTACGCCGAAAGAAAG
AGATTACAGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N2Z1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N2Z1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               37-146, - strand, RNAz p=0.972108
               

               
               256-358, - strand, RNAz p=0.520973

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-146, - strand, RNAz p=0.972108
               

               
               256-358, - strand, RNAz p=0.520973

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               255-343, + strand, RNAmicro p=0.952257

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               255-343, + strand, RNAmicro p=0.952257

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC000595, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC000595, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-358, gnl|bosTau2|chr5 (68005817-68006174)
               

               
               1-358, gnl|canFam2|chr10 (29355135-29354740)
               

               
               1-358, gnl|dasNov1|scaffold_132238 (4184-4580)
               

               
               1-358, gnl|galGal2|chr1 (47602130-47601778)
               

               
               1-358, gnl|hg17|chr22 (37226451-37226846)
               

               
               1-358, gnl|Hg17|chr22 (37226813-37226456)
               

               
               1-358, gnl|loxAfr1|scaffold_38088 (33031-33426)
               

               
               1-358, gnl|mm7|chr15 (79630322-79630721)
               

               
               1-358, gnl|Mm7|chr15 (79630688-79630327)
               

               
               1-358, gnl|monDom2|scaffold_133 (2575772-2575415)
               

               
               1-358, gnl|panTro1|chr23 (37450499-37450894)
               

               
               1-358, gnl|rheMac2|chr10 (82409605-82410000)
               

               
               1-358, gnl|rn3|chr7 (117570968-117570572)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-358, gnl|bosTau2|chr5 (68005817-68006174)
               

               
               1-358, gnl|canFam2|chr10 (29355135-29354740)
               

               
               1-358, gnl|dasNov1|scaffold_132238 (4184-4580)
               

               
               1-358, gnl|galGal2|chr1 (47602130-47601778)
               

               
               1-358, gnl|hg17|chr22 (37226451-37226846)
               

               
               1-358, gnl|Hg17|chr22 (37226813-37226456)
               

               
               1-358, gnl|loxAfr1|scaffold_38088 (33031-33426)
               

               
               1-358, gnl|mm7|chr15 (79630322-79630721)
               

               
               1-358, gnl|Mm7|chr15 (79630688-79630327)
               

               
               1-358, gnl|monDom2|scaffold_133 (2575772-2575415)
               

               
               1-358, gnl|panTro1|chr23 (37450499-37450894)
               

               
               1-358, gnl|rheMac2|chr10 (82409605-82410000)
               

               
               1-358, gnl|rn3|chr7 (117570968-117570572)

	37-146, - strand, RNAz p=0.972108
	256-358, - strand, RNAz p=0.520973

	1-358, gnl\|bosTau2\|chr5 (68005817-68006174)
	1-358, gnl\|canFam2\|chr10 (29355135-29354740)
	1-358, gnl\|dasNov1\|scaffold_132238 (4184-4580)
	1-358, gnl\|galGal2\|chr1 (47602130-47601778)
	1-358, gnl\|hg17\|chr22 (37226451-37226846)
	1-358, gnl\|Hg17\|chr22 (37226813-37226456)
	1-358, gnl\|loxAfr1\|scaffold_38088 (33031-33426)
	1-358, gnl\|mm7\|chr15 (79630322-79630721)
	1-358, gnl\|Mm7\|chr15 (79630688-79630327)
	1-358, gnl\|monDom2\|scaffold_133 (2575772-2575415)
	1-358, gnl\|panTro1\|chr23 (37450499-37450894)
	1-358, gnl\|rheMac2\|chr10 (82409605-82410000)
	1-358, gnl\|rn3\|chr7 (117570968-117570572)