Non-Coding RNA Search

Ss1.1-Ova1-OVRM10097A06.5

Sequence:


               
               ATTTGAAACAGCTGGCTAATAAATAATTTTATCAGATTTGGCTGATGGATCACTGGGAGC
TGCTTATACAAAATAATACATGTGTTCTCTTTTTTCAATAGTAGGTGCGAGAATGTGCTT
AACTATTTTTTGATGAAGATGGAATGGAATTTAAAATTAGTTGATTAATGCAATTACAAA
GTGAAAAATCATTACCTACCTTACTAAGTTTTATATTTTGTTTCTTTATTTTAAGCCTTA
ATTCCAGGCACTCCAGAGATCTTGAACTTGTCTGCTGATTTCTCAACTTCCACATTACAC
CTCAAGTGGAATGACAAGGGTTCTGTTTTTCCACGTCACTCAAATGTCATCTGGGAAATT
AAAGTTCTGCGTAAAGAGAATATGGAAATCGTAAAATCAGTGACCCACAACACTACTCTG
AACGGCAGAGATACAGTTCATCACTGGAGCTGGACCTCAGACATGCCCTTAGAGTGTGCC
ACTCACTACGTGGGAATTAGATGCTACATTGATGATCCTCTCTTCTCTGGTCGCAAAGAG
TGGAGTGACTGGAGCCCACTGAAGAATATCTCTTGGTTTCCTGATTCTCAGACTAAAGTT
TTTCCTCAAGATAAAGTGGTACTTGTAGGCTCAGATATAACAGTTTGTTGTGTGACTCAA
GAAAAAGTGTTATCGGCACAGATTGGCAGAACAAATTGTCCCCTTATCCATCTTGATGGG
AAAAATGTTGCAATCAAGATCCGTAATATTTCTGCTTCTGAAAGTAGTGGAACAAATGTG
GTTTTCTCAGTAGAAGATAACATGTTTGGAACAGTTATTTTTGCAGGATGTAAGTATATG
ATTTTTTTTTAAAAGAGTTTCTGTTTATCTGTTTTGGTCCTTCTTGAGAGCCCTAATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGAAACAGCTGGCTAATAAATAATTTTATCAGATTTGGCTGATGGATCACTGGGAGC
TGCTTATACAAAATAATACATGTGTTCTCTTTTTTCAATAGTAGGTGCGAGAATGTGCTT
AACTATTTTTTGATGAAGATGGAATGGAATTTAAAATTAGTTGATTAATGCAATTACAAA
GTGAAAAATCATTACCTACCTTACTAAGTTTTATATTTTGTTTCTTTATTTTAAGCCTTA
ATTCCAGGCACTCCAGAGATCTTGAACTTGTCTGCTGATTTCTCAACTTCCACATTACAC
CTCAAGTGGAATGACAAGGGTTCTGTTTTTCCACGTCACTCAAATGTCATCTGGGAAATT
AAAGTTCTGCGTAAAGAGAATATGGAAATCGTAAAATCAGTGACCCACAACACTACTCTG
AACGGCAGAGATACAGTTCATCACTGGAGCTGGACCTCAGACATGCCCTTAGAGTGTGCC
ACTCACTACGTGGGAATTAGATGCTACATTGATGATCCTCTCTTCTCTGGTCGCAAAGAG
TGGAGTGACTGGAGCCCACTGAAGAATATCTCTTGGTTTCCTGATTCTCAGACTAAAGTT
TTTCCTCAAGATAAAGTGGTACTTGTAGGCTCAGATATAACAGTTTGTTGTGTGACTCAA
GAAAAAGTGTTATCGGCACAGATTGGCAGAACAAATTGTCCCCTTATCCATCTTGATGGG
AAAAATGTTGCAATCAAGATCCGTAATATTTCTGCTTCTGAAAGTAGTGGAACAAATGTG
GTTTTCTCAGTAGAAGATAACATGTTTGGAACAGTTATTTTTGCAGGATGTAAGTATATG
ATTTTTTTTTAAAAGAGTTTCTGTTTATCTGTTTTGGTCCTTCTTGAGAGCCCTAATGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61887089|ref|XP_608516.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887089|ref|XP_608516.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               242-361, - strand, RNAz p=0.686886

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-361, - strand, RNAz p=0.686886

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-401, gnl|bosTau2|chr20 (22550231-22549823)
               

               
               1-401, gnl|canFam2|chr4 (73537587-73537301)
               

               
               1-401, gnl|dasNov1|scaffold_6526 (37679-37384)
               

               
               1-401, gnl|echTel1|scaffold_161234 (3716-4023)
               

               
               1-401, gnl|hg17|chr5 (38559265-38559564)
               

               
               1-401, gnl|Hg17|chr5 (38559826-38559276)
               

               
               1-401, gnl|loxAfr1|scaffold_22422 (34172-33880)
               

               
               1-401, gnl|mm7|chr15 (6991454-6991174)
               

               
               1-401, gnl|Mm7|chr15 (6990850-6991441)
               

               
               1-401, gnl|monDom2|scaffold_20 (33291609-33291319)
               

               
               1-401, gnl|oryCun1|scaffold_204354 (38472-38748)
               

               
               1-401, gnl|panTro1|chr4 (78189563-78189264)
               

               
               1-401, gnl|rheMac2|chr6 (38355886-38356185)
               

               
               1-401, gnl|rn3|chr2 (56378301-56378026)
               


               
               579-898, gnl|bosTau2|chr20 (22541643-22541322)
               

               
               579-898, gnl|Hg17|chr5 (38546573-38546258)
               

               
               579-898, gnl|Mm7|chr15 (6995763-6996074)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-401, gnl|bosTau2|chr20 (22550231-22549823)
               

               
               1-401, gnl|canFam2|chr4 (73537587-73537301)
               

               
               1-401, gnl|dasNov1|scaffold_6526 (37679-37384)
               

               
               1-401, gnl|echTel1|scaffold_161234 (3716-4023)
               

               
               1-401, gnl|hg17|chr5 (38559265-38559564)
               

               
               1-401, gnl|Hg17|chr5 (38559826-38559276)
               

               
               1-401, gnl|loxAfr1|scaffold_22422 (34172-33880)
               

               
               1-401, gnl|mm7|chr15 (6991454-6991174)
               

               
               1-401, gnl|Mm7|chr15 (6990850-6991441)
               

               
               1-401, gnl|monDom2|scaffold_20 (33291609-33291319)
               

               
               1-401, gnl|oryCun1|scaffold_204354 (38472-38748)
               

               
               1-401, gnl|panTro1|chr4 (78189563-78189264)
               

               
               1-401, gnl|rheMac2|chr6 (38355886-38356185)
               

               
               1-401, gnl|rn3|chr2 (56378301-56378026)
               


               
               579-898, gnl|bosTau2|chr20 (22541643-22541322)
               

               
               579-898, gnl|Hg17|chr5 (38546573-38546258)
               

               
               579-898, gnl|Mm7|chr15 (6995763-6996074)

	1-401, gnl\|bosTau2\|chr20 (22550231-22549823)
	1-401, gnl\|canFam2\|chr4 (73537587-73537301)
	1-401, gnl\|dasNov1\|scaffold_6526 (37679-37384)
	1-401, gnl\|echTel1\|scaffold_161234 (3716-4023)
	1-401, gnl\|hg17\|chr5 (38559265-38559564)
	1-401, gnl\|Hg17\|chr5 (38559826-38559276)
	1-401, gnl\|loxAfr1\|scaffold_22422 (34172-33880)
	1-401, gnl\|mm7\|chr15 (6991454-6991174)
	1-401, gnl\|Mm7\|chr15 (6990850-6991441)
	1-401, gnl\|monDom2\|scaffold_20 (33291609-33291319)
	1-401, gnl\|oryCun1\|scaffold_204354 (38472-38748)
	1-401, gnl\|panTro1\|chr4 (78189563-78189264)
	1-401, gnl\|rheMac2\|chr6 (38355886-38356185)
	1-401, gnl\|rn3\|chr2 (56378301-56378026)

	579-898, gnl\|bosTau2\|chr20 (22541643-22541322)
	579-898, gnl\|Hg17\|chr5 (38546573-38546258)
	579-898, gnl\|Mm7\|chr15 (6995763-6996074)