Non-Coding RNA Search

Ss1.1-Ova1-OVRM10098G09.5

Sequence:


               
               TTTAGTTGTAATATTAGAACATGAGTAATCTTTGTGTCTGTGATGTCTCTGAGTTCCTGT
TTGAATAATCTCTTCCTACTGCCCGTGCTGGTAACCTTAAGCAAATAATTGAATAACCCA
AGTGGATGTTGGCAGCTTCTGCTGCTCGGTGGCAAAGCCCATATATTGTGCCCTAATATG
AATGTGAGTGAGTTTGGTGGCGATTTTATCTTGTTTATTCTTCAATTGGTTGGGATTTTG
TTGGTTGGTTTGTTTCTGCTTTCATCTGAAAAATGATACTTGATTCTATTGTTTTGGATG
CTTAAAGAGGAAACATGACAAAAGAATTAGGCTTCTATTTCACTGAATCTTAGACCCCAA
AGCGGTCCCAGAGATCATGGAGTCTGGTACATTTGACTCTGAGAATTGTGATTGCATTGA
ATTCTATTTATAAAAGCCCTCCAGCAAAGAGATGCCCAGACTCCTATGATCACCTTTAAC
CAAATAAAACGGGAGTCCAGTGTCATTAAACACAGCCCAGTCAATCCATGGTCTCATTCT
GCAGAAATGGGAGCAGCCGCACCTGTGCCAATGTTGCCAGGTACAGCCGCCACAGAGCGG
ACAGTTCCCCAGCCAGGCTACCCCAGGTCTGGGGCTGGGGGCCTCTAGACTCATGAGTCT
TTCACAAAAGTTTCAAGGTCACTGAGCTGACTGCTCATTCGACATAGAAGGATGTGGGGA
TTTTAGAACATGGAGTATGGCGTGCCAGAGATTAATTAAGTGTGTAATTAAGTTTACAGA
GCGGTTAAGCAAGAGGAATGCAATATATGTAAAAATATTAGTATGTCTGAGCACAGGGAT
TAAAGGCTGAGTGATGGGTTTGCGGATCAGTTACTTTTTGGGTGTTGACACGTGAGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAGTTGTAATATTAGAACATGAGTAATCTTTGTGTCTGTGATGTCTCTGAGTTCCTGT
TTGAATAATCTCTTCCTACTGCCCGTGCTGGTAACCTTAAGCAAATAATTGAATAACCCA
AGTGGATGTTGGCAGCTTCTGCTGCTCGGTGGCAAAGCCCATATATTGTGCCCTAATATG
AATGTGAGTGAGTTTGGTGGCGATTTTATCTTGTTTATTCTTCAATTGGTTGGGATTTTG
TTGGTTGGTTTGTTTCTGCTTTCATCTGAAAAATGATACTTGATTCTATTGTTTTGGATG
CTTAAAGAGGAAACATGACAAAAGAATTAGGCTTCTATTTCACTGAATCTTAGACCCCAA
AGCGGTCCCAGAGATCATGGAGTCTGGTACATTTGACTCTGAGAATTGTGATTGCATTGA
ATTCTATTTATAAAAGCCCTCCAGCAAAGAGATGCCCAGACTCCTATGATCACCTTTAAC
CAAATAAAACGGGAGTCCAGTGTCATTAAACACAGCCCAGTCAATCCATGGTCTCATTCT
GCAGAAATGGGAGCAGCCGCACCTGTGCCAATGTTGCCAGGTACAGCCGCCACAGAGCGG
ACAGTTCCCCAGCCAGGCTACCCCAGGTCTGGGGCTGGGGGCCTCTAGACTCATGAGTCT
TTCACAAAAGTTTCAAGGTCACTGAGCTGACTGCTCATTCGACATAGAAGGATGTGGGGA
TTTTAGAACATGGAGTATGGCGTGCCAGAGATTAATTAAGTGTGTAATTAAGTTTACAGA
GCGGTTAAGCAAGAGGAATGCAATATATGTAAAAATATTAGTATGTCTGAGCACAGGGAT
TAAAGGCTGAGTGATGGGTTTGCGGATCAGTTACTTTTTGGGTGTTGACACGTGAGCCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               492-602, - strand, RNAz p=0.781209

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               492-602, - strand, RNAz p=0.781209

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-450, gnl|bosTau2|chr26 (32040332-32039879)
               

               
               1-450, gnl|canFam2|chr28 (39326560-39327221)
               

               
               1-450, gnl|dasNov1|scaffold_25668 (47687-46960)
               

               
               1-450, gnl|echTel1|scaffold_282831 (40091-39432)
               

               
               1-450, gnl|hg17|chr10 (129056959-129057649)
               

               
               1-450, gnl|Hg17|chr10 (129057292-129057725)
               

               
               1-450, gnl|loxAfr1|scaffold_4838 (27161-26460)
               

               
               1-450, gnl|mm7|chr7 (131508271-131509007)
               

               
               1-450, gnl|Mm7|chr7 (131508617-131509083)
               

               
               1-450, gnl|oryCun1|scaffold_214858 (40132-40820)
               

               
               1-450, gnl|panTro1|chr8 (131644850-131645543)
               

               
               1-450, gnl|rheMac2|chr9 (126999513-127000204)
               

               
               1-450, gnl|rn3|chr1 (194873339-194874051)
               


               
               492-897, gnl|bosTau2|chr26 (32039196-32038782)
               

               
               492-897, gnl|Hg17|chr10 (129057786-129058201)
               

               
               492-897, gnl|Mm7|chr7 (131509147-131509519)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-450, gnl|bosTau2|chr26 (32040332-32039879)
               

               
               1-450, gnl|canFam2|chr28 (39326560-39327221)
               

               
               1-450, gnl|dasNov1|scaffold_25668 (47687-46960)
               

               
               1-450, gnl|echTel1|scaffold_282831 (40091-39432)
               

               
               1-450, gnl|hg17|chr10 (129056959-129057649)
               

               
               1-450, gnl|Hg17|chr10 (129057292-129057725)
               

               
               1-450, gnl|loxAfr1|scaffold_4838 (27161-26460)
               

               
               1-450, gnl|mm7|chr7 (131508271-131509007)
               

               
               1-450, gnl|Mm7|chr7 (131508617-131509083)
               

               
               1-450, gnl|oryCun1|scaffold_214858 (40132-40820)
               

               
               1-450, gnl|panTro1|chr8 (131644850-131645543)
               

               
               1-450, gnl|rheMac2|chr9 (126999513-127000204)
               

               
               1-450, gnl|rn3|chr1 (194873339-194874051)
               


               
               492-897, gnl|bosTau2|chr26 (32039196-32038782)
               

               
               492-897, gnl|Hg17|chr10 (129057786-129058201)
               

               
               492-897, gnl|Mm7|chr7 (131509147-131509519)

	1-450, gnl\|bosTau2\|chr26 (32040332-32039879)
	1-450, gnl\|canFam2\|chr28 (39326560-39327221)
	1-450, gnl\|dasNov1\|scaffold_25668 (47687-46960)
	1-450, gnl\|echTel1\|scaffold_282831 (40091-39432)
	1-450, gnl\|hg17\|chr10 (129056959-129057649)
	1-450, gnl\|Hg17\|chr10 (129057292-129057725)
	1-450, gnl\|loxAfr1\|scaffold_4838 (27161-26460)
	1-450, gnl\|mm7\|chr7 (131508271-131509007)
	1-450, gnl\|Mm7\|chr7 (131508617-131509083)
	1-450, gnl\|oryCun1\|scaffold_214858 (40132-40820)
	1-450, gnl\|panTro1\|chr8 (131644850-131645543)
	1-450, gnl\|rheMac2\|chr9 (126999513-127000204)
	1-450, gnl\|rn3\|chr1 (194873339-194874051)

	492-897, gnl\|bosTau2\|chr26 (32039196-32038782)
	492-897, gnl\|Hg17\|chr10 (129057786-129058201)
	492-897, gnl\|Mm7\|chr7 (131509147-131509519)