Non-Coding RNA Search

Ss1.1-Ova1-OVRM10103A01.5

Sequence:


               
               GCTCCTTTCACGCTGTCGCTGCCTGTAGGTGGTTGTGGCCACCGTGCCCAGGAGGAGGCG
ACTGCGGCGAATGATGCCTGGGAAACTTCTCTGGGGGGACATTATGGAGCTGGAAGCACC
CTTGGAGGAGACCGAGAGCCAAAGGAAGGAGAGGCAAAAGGTGCGCTGAGGATGGGCCGC
GCCTCCTTTTGGGCTGCGCCGGCTTGGGCGGGGAGGGGAGTCTCCCCGATGGCCTGTCAC
AACCCGGTCGGAGCATCCGAGGGCCTCTCTTCGCGCTGCCCTCGTACCTCTGAGGTCGCT
CCGGGACCATTCCCACCGCCACACCCCTAACCTGGAGAAGGGCTTCGGCCCGGCCTCCCG
TGGTCCTCCAGTCGTTCTCATCGGCGCCTACAAGATGGGCAGACTCAAGTTCTCATCGTG
GAATCTGTTATTTCTTTCCTCTCCTTCCTTAAGCAGCGAGGCCTGTCATTTGGTTCTCGT
TGGCCGTCTAGAAGATGATTAAGAAAAAATGATTGCTTTGAATAAGTGTTCCTTCTCCGT
CATCCTGTCCTGTATGCGAGAATCTTGGGGAAAGCGATCTTAGGTTTATGAGGGAAAAGA
ACGGGTCAGTGGAGTAGTGAAGAAAACAGGAAAGACCCACGTTGCCAGGATTTGGCTGTG
ATGGAGATCGTGTGGGTTGTATTATTAATAGCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCTTTCACGCTGTCGCTGCCTGTAGGTGGTTGTGGCCACCGTGCCCAGGAGGAGGCG
ACTGCGGCGAATGATGCCTGGGAAACTTCTCTGGGGGGACATTATGGAGCTGGAAGCACC
CTTGGAGGAGACCGAGAGCCAAAGGAAGGAGAGGCAAAAGGTGCGCTGAGGATGGGCCGC
GCCTCCTTTTGGGCTGCGCCGGCTTGGGCGGGGAGGGGAGTCTCCCCGATGGCCTGTCAC
AACCCGGTCGGAGCATCCGAGGGCCTCTCTTCGCGCTGCCCTCGTACCTCTGAGGTCGCT
CCGGGACCATTCCCACCGCCACACCCCTAACCTGGAGAAGGGCTTCGGCCCGGCCTCCCG
TGGTCCTCCAGTCGTTCTCATCGGCGCCTACAAGATGGGCAGACTCAAGTTCTCATCGTG
GAATCTGTTATTTCTTTCCTCTCCTTCCTTAAGCAGCGAGGCCTGTCATTTGGTTCTCGT
TGGCCGTCTAGAAGATGATTAAGAAAAAATGATTGCTTTGAATAAGTGTTCCTTCTCCGT
CATCCTGTCCTGTATGCGAGAATCTTGGGGAAAGCGATCTTAGGTTTATGAGGGAAAAGA
ACGGGTCAGTGGAGTAGTGAAGAAAACAGGAAAGACCCACGTTGCCAGGATTTGGCTGTG
ATGGAGATCGTGTGGGTTGTATTATTAATAGCCTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               71-190, + strand, RNAz p=0.59876

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-190, + strand, RNAz p=0.59876

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               3-686, gnl|bosTau2|chr28 (16498980-16498287)
               

               
               3-686, gnl|canFam2|chr4 (23278744-23279245)
               

               
               3-686, gnl|dasNov1|scaffold_4463 (28370-27853)
               

               
               3-686, gnl|echTel1|scaffold_315779 (42965-42484)
               

               
               3-686, gnl|hg17|chr10 (70331031-70331541)
               

               
               3-686, gnl|Hg17|chr10 (70331076-70331767)
               

               
               3-686, gnl|loxAfr1|scaffold_2021 (93054-93565)
               

               
               3-686, gnl|mm7|chr10 (62170019-62169510)
               

               
               3-686, gnl|Mm7|chr10 (62169971-62169273)
               

               
               3-686, gnl|monDom2|scaffold_242 (448244-447755)
               

               
               3-686, gnl|oryCun1|scaffold_104232 (14288-14782)
               

               
               3-686, gnl|panTro1|chr8 (71484175-71484685)
               

               
               3-686, gnl|rheMac2|chr9 (68124026-68123514)
               

               
               3-686, gnl|rn3|chr20 (29911066-29910550)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-686, gnl|bosTau2|chr28 (16498980-16498287)
               

               
               3-686, gnl|canFam2|chr4 (23278744-23279245)
               

               
               3-686, gnl|dasNov1|scaffold_4463 (28370-27853)
               

               
               3-686, gnl|echTel1|scaffold_315779 (42965-42484)
               

               
               3-686, gnl|hg17|chr10 (70331031-70331541)
               

               
               3-686, gnl|Hg17|chr10 (70331076-70331767)
               

               
               3-686, gnl|loxAfr1|scaffold_2021 (93054-93565)
               

               
               3-686, gnl|mm7|chr10 (62170019-62169510)
               

               
               3-686, gnl|Mm7|chr10 (62169971-62169273)
               

               
               3-686, gnl|monDom2|scaffold_242 (448244-447755)
               

               
               3-686, gnl|oryCun1|scaffold_104232 (14288-14782)
               

               
               3-686, gnl|panTro1|chr8 (71484175-71484685)
               

               
               3-686, gnl|rheMac2|chr9 (68124026-68123514)
               

               
               3-686, gnl|rn3|chr20 (29911066-29910550)

	3-686, gnl\|bosTau2\|chr28 (16498980-16498287)
	3-686, gnl\|canFam2\|chr4 (23278744-23279245)
	3-686, gnl\|dasNov1\|scaffold_4463 (28370-27853)
	3-686, gnl\|echTel1\|scaffold_315779 (42965-42484)
	3-686, gnl\|hg17\|chr10 (70331031-70331541)
	3-686, gnl\|Hg17\|chr10 (70331076-70331767)
	3-686, gnl\|loxAfr1\|scaffold_2021 (93054-93565)
	3-686, gnl\|mm7\|chr10 (62170019-62169510)
	3-686, gnl\|Mm7\|chr10 (62169971-62169273)
	3-686, gnl\|monDom2\|scaffold_242 (448244-447755)
	3-686, gnl\|oryCun1\|scaffold_104232 (14288-14782)
	3-686, gnl\|panTro1\|chr8 (71484175-71484685)
	3-686, gnl\|rheMac2\|chr9 (68124026-68123514)
	3-686, gnl\|rn3\|chr20 (29911066-29910550)