Ss1.1-Ova1-OVRM10104C08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATGGCGCTCTCCAGAGTGTGCTGGGCTCGGGCTGCTTTGTGGGGTTCGGCGGTACCCC CTGGACCTTATGTCGCCCGGAAGCTGCAGTTTGTTCGCTCTGGCCTAGCCTGGGGGGCCC CTCGGTCTTCAAAGCTTCACGTTACTCCAAAGACAGATGTGAAGAGCTTGATCTCTTATG TGGCGACCAAGACAAAAGTGATTCATGAGAAATACCATCGTTTCTTGGGTCGTCATTTCC CCCGCTTCTATGTCCTGTATACAATCTTCATGAAAGGATTGCAGATGTTATGGGCTGATG CCAAAAAGGCTAGAAGAATAAAGACAAATATGTGGAAGCACAATGTAAAGTTTCATCAAC TTTCATACCGGGAGATGGAGCATTTGAGACAGTTCCGTCGAGACGTCAACAAGTGTCTTT TCCTAGGTATTCTTTCCATTCCACCCTTTGCCAACTACCTGGTCTTCTTGCTAATGTACC TGTTTCCTAGGCAACTGCTGATCCAACATTTCTGGACCCCAAAGCAACAAATTGATTTCT TAGATATCTATCATGCTCTCCGGAATCAGTCCCACCCTGAAATCCTTAGTTATTTAGAAA GAGTTATCCCTCTCATTTCTGATGCAGGACTCCAGTGGCATATGACCGAGCTGTGCAGCA AGATGCAACGTGGTACCCACCCATCGAAACATGATATCCTGGCTCTGAGAGAGTGCTTCT CGGACCATCCTCTGGGCATGAACCAGCTCCAGGCTTTGCAGATGAGAGCCTTGAGTCGAG CCATGCTTCTCACACCTTATCTGCCTTCTGTCTTGTTGAGACACCGTTTAAAGACTCATA CCACTGTGATTCACCAGCTGGACCAGGCTTTGGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATGGCGCTCTCCAGAGTGTGCTGGGCTCGGGCTGCTTTGTGGGGTTCGGCGGTACCCC CTGGACCTTATGTCGCCCGGAAGCTGCAGTTTGTTCGCTCTGGCCTAGCCTGGGGGGCCC CTCGGTCTTCAAAGCTTCACGTTACTCCAAAGACAGATGTGAAGAGCTTGATCTCTTATG TGGCGACCAAGACAAAAGTGATTCATGAGAAATACCATCGTTTCTTGGGTCGTCATTTCC CCCGCTTCTATGTCCTGTATACAATCTTCATGAAAGGATTGCAGATGTTATGGGCTGATG CCAAAAAGGCTAGAAGAATAAAGACAAATATGTGGAAGCACAATGTAAAGTTTCATCAAC TTTCATACCGGGAGATGGAGCATTTGAGACAGTTCCGTCGAGACGTCAACAAGTGTCTTT TCCTAGGTATTCTTTCCATTCCACCCTTTGCCAACTACCTGGTCTTCTTGCTAATGTACC TGTTTCCTAGGCAACTGCTGATCCAACATTTCTGGACCCCAAAGCAACAAATTGATTTCT TAGATATCTATCATGCTCTCCGGAATCAGTCCCACCCTGAAATCCTTAGTTATTTAGAAA GAGTTATCCCTCTCATTTCTGATGCAGGACTCCAGTGGCATATGACCGAGCTGTGCAGCA AGATGCAACGTGGTACCCACCCATCGAAACATGATATCCTGGCTCTGAGAGAGTGCTTCT CGGACCATCCTCTGGGCATGAACCAGCTCCAGGCTTTGCAGATGAGAGCCTTGAGTCGAG CCATGCTTCTCACACCTTATCTGCCTTCTGTCTTGTTGAGACACCGTTTAAAGACTCATA CCACTGTGATTCACCAGCTGGACCAGGCTTTGGCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 534-662, - strand, RNAz p=0.81044 | |
| 543-662, - strand, RNAz p=0.742552 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 534-662, - strand, RNAz p=0.81044 | |
| 543-662, - strand, RNAz p=0.742552 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 124-277, gnl|bosTau2|chr5 (18781387-18781540) | |
| 124-277, gnl|canFam2|chr27 (6774634-6773866) | |
| 124-277, gnl|dasNov1|scaffold_87708 (3379-2486) | |
| 124-277, gnl|echTel1|scaffold_282572 (46802-45969) | |
| 124-277, gnl|hg17|chr12 (49728643-49729491) | |
| 124-277, gnl|Hg17|chr12 (49729083-49729236) | |
| 124-277, gnl|loxAfr1|scaffold_361 (37835-38697) | |
| 124-277, gnl|mm7|chr15 (100454587-100455324) | |
| 124-277, gnl|Mm7|chr15 (100454929-100455082) | |
| 124-277, gnl|oryCun1|scaffold_174953 (3773-4607) | |
| 124-277, gnl|panTro1|chr10 (50947434-50948275) | |
| 124-277, gnl|rheMac2|chr11 (48194335-48195175) | |
| 124-277, gnl|rn3|chr7 (139249058-139249805) | |
| 465-662, gnl|bosTau2|chr5 (18785285-18785481) | |
| 465-662, gnl|canFam2|chr27 (6769968-6769762) | |
| 465-662, gnl|dasNov1|scaffold_171876 (2477-2676) | |
| 465-662, gnl|fr1|chrUn (283455118-283455323) | |
| 465-662, gnl|hg17|chr12 (49735869-49736075) | |
| 465-662, gnl|Hg17|chr12 (49735875-49736071) | |
| 465-662, gnl|loxAfr1|scaffold_361 (42458-42663) | |
| 465-662, gnl|mm7|chr15 (100460254-100460458) | |
| 465-662, gnl|Mm7|chr15 (100460258-100460454) | |
| 465-662, gnl|oryCun1|scaffold_213545 (26600-26806) | |
| 465-662, gnl|panTro1|chr10 (50954658-50954864) | |
| 465-662, gnl|rheMac2|chr11 (48201619-48201825) | |
| 465-662, gnl|rn3|chr7 (139254292-139254498) | |
| 465-662, gnl|tetNig1|chr9 (8851434-8851645) | |
| 764-876, gnl|bosTau2|chr5 (18785805-18785917) | |
| 764-876, gnl|Hg17|chr12 (49736399-49736511) | |
| 764-876, gnl|Mm7|chr15 (100460746-100460858) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-277, gnl|bosTau2|chr5 (18781387-18781540) | |
| 124-277, gnl|canFam2|chr27 (6774634-6773866) | |
| 124-277, gnl|dasNov1|scaffold_87708 (3379-2486) | |
| 124-277, gnl|echTel1|scaffold_282572 (46802-45969) | |
| 124-277, gnl|hg17|chr12 (49728643-49729491) | |
| 124-277, gnl|Hg17|chr12 (49729083-49729236) | |
| 124-277, gnl|loxAfr1|scaffold_361 (37835-38697) | |
| 124-277, gnl|mm7|chr15 (100454587-100455324) | |
| 124-277, gnl|Mm7|chr15 (100454929-100455082) | |
| 124-277, gnl|oryCun1|scaffold_174953 (3773-4607) | |
| 124-277, gnl|panTro1|chr10 (50947434-50948275) | |
| 124-277, gnl|rheMac2|chr11 (48194335-48195175) | |
| 124-277, gnl|rn3|chr7 (139249058-139249805) | |
| 465-662, gnl|bosTau2|chr5 (18785285-18785481) | |
| 465-662, gnl|canFam2|chr27 (6769968-6769762) | |
| 465-662, gnl|dasNov1|scaffold_171876 (2477-2676) | |
| 465-662, gnl|fr1|chrUn (283455118-283455323) | |
| 465-662, gnl|hg17|chr12 (49735869-49736075) | |
| 465-662, gnl|Hg17|chr12 (49735875-49736071) | |
| 465-662, gnl|loxAfr1|scaffold_361 (42458-42663) | |
| 465-662, gnl|mm7|chr15 (100460254-100460458) | |
| 465-662, gnl|Mm7|chr15 (100460258-100460454) | |
| 465-662, gnl|oryCun1|scaffold_213545 (26600-26806) | |
| 465-662, gnl|panTro1|chr10 (50954658-50954864) | |
| 465-662, gnl|rheMac2|chr11 (48201619-48201825) | |
| 465-662, gnl|rn3|chr7 (139254292-139254498) | |
| 465-662, gnl|tetNig1|chr9 (8851434-8851645) | |
| 764-876, gnl|bosTau2|chr5 (18785805-18785917) | |
| 764-876, gnl|Hg17|chr12 (49736399-49736511) | |
| 764-876, gnl|Mm7|chr15 (100460746-100460858) |