Ss1.1-Ova1-OVRM10110D02.5
|
ATTATTATTGTT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATTATTTTTTTTAATCTACAGATGTGTTGCTAGAATCAGGCAAGGCTG
CTGGGGGTGGAAATCAGCCTGCAGAAGTCAATTACATTTCTGTATAGACTGCAAAAAGAA
AATGAAACTTAAAAGAGACACCATTCTTAGTAGTGTAAAAACCAAAACAAACCAACAAAA
CCCCAGAAAAATAATCCCCCAAGCAGGTAAGACTCCACAGGGTGTATTGTCTTCCTCCTC
CAGGGTACTGGTGTCTTTCTGTTTCCATGTGGTCCTTAGAACCATAGACCCATAGAAATG
AGTGGCTCCTGCCTGATGTGCCTCGGCAGACACGTGGAGTGTGCAGGTGCTGAGGTTTGG
TTGGTACAGTGGGGAAACCACTGACCCTGCTTCCTGAGAGCATCGTGTCGCTGCAGGGAG
AATTCTGTCCCCGGCTCCCACCTCCTTGCTGTTGGTGTGTGTCCTGAGGAGTCAGGAATC
TTAAATCCGTCCATGGTAGCAAGGTGCCTTCGTTGATGAGGTGAGGCCTATAGGCTTCTC
GTAAGCTCTCAAAAGATTTAGGTCTATTTAAGTACCTACTTTTCCAAAGACTGTTATTTT
GGAGAAACTCAAAAGCATGTCAATTCTTTATTTTTCTCCTTAGGCAAAGAAATTGAATCT
GAAATGGCCGATGAATAAGCCAAGGCTTAGAATAGAATACATTTCTATTTTTAGTGTTTT
ATCTTTCTTTAAAATGAGTAGCATTGTTTCTTTAAAGTAGAAAGTCAGTTTTCTCCATCC
TTTTAAAGCATGAAATAAATTATTTCCAAATATATCTTTTAGTTACCAAAATTCTCCTAG
TTTTTCTGGGTG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTATTATTGTT------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ATTATTTTTTTTAATCTACAGATGTGTTGCTAGAATCAGGCAAGGCTG
CTGGGGGTGGAAATCAGCCTGCAGAAGTCAATTACATTTCTGTATAGACTGCAAAAAGAA
AATGAAACTTAAAAGAGACACCATTCTTAGTAGTGTAAAAACCAAAACAAACCAACAAAA
CCCCAGAAAAATAATCCCCCAAGCAGGTAAGACTCCACAGGGTGTATTGTCTTCCTCCTC
CAGGGTACTGGTGTCTTTCTGTTTCCATGTGGTCCTTAGAACCATAGACCCATAGAAATG
AGTGGCTCCTGCCTGATGTGCCTCGGCAGACACGTGGAGTGTGCAGGTGCTGAGGTTTGG
TTGGTACAGTGGGGAAACCACTGACCCTGCTTCCTGAGAGCATCGTGTCGCTGCAGGGAG
AATTCTGTCCCCGGCTCCCACCTCCTTGCTGTTGGTGTGTGTCCTGAGGAGTCAGGAATC
TTAAATCCGTCCATGGTAGCAAGGTGCCTTCGTTGATGAGGTGAGGCCTATAGGCTTCTC
GTAAGCTCTCAAAAGATTTAGGTCTATTTAAGTACCTACTTTTCCAAAGACTGTTATTTT
GGAGAAACTCAAAAGCATGTCAATTCTTTATTTTTCTCCTTAGGCAAAGAAATTGAATCT
GAAATGGCCGATGAATAAGCCAAGGCTTAGAATAGAATACATTTCTATTTTTAGTGTTTT
ATCTTTCTTTAAAATGAGTAGCATTGTTTCTTTAAAGTAGAAAGTCAGTTTTCTCCATCC
TTTTAAAGCATGAAATAAATTATTTCCAAATATATCTTTTAGTTACCAAAATTCTCCTAG
TTTTTCTGGGTG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
522-851, gnl|bosTau2|chr13 (23591505-23591164) |
|
522-851, gnl|canFam2|chr24 (8339399-8338930) |
|
522-851, gnl|hg17|chr20 (17597584-17598043) |
|
522-851, gnl|Hg17|chr20 (17598026-17597672) |
|
522-851, gnl|loxAfr1|scaffold_47440 (19067-18637) |
|
522-851, gnl|mm7|chr2 (143738607-143739033) |
|
522-851, gnl|Mm7|chr2 (143738997-143738681) |
|
522-851, gnl|panTro1|chr21 (17449675-17450135) |
|
522-851, gnl|rheMac2|chr10 (50995947-50996410) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
522-851, gnl|bosTau2|chr13 (23591505-23591164) |
|
522-851, gnl|canFam2|chr24 (8339399-8338930) |
|
522-851, gnl|hg17|chr20 (17597584-17598043) |
|
522-851, gnl|Hg17|chr20 (17598026-17597672) |
|
522-851, gnl|loxAfr1|scaffold_47440 (19067-18637) |
|
522-851, gnl|mm7|chr2 (143738607-143739033) |
|
522-851, gnl|Mm7|chr2 (143738997-143738681) |
|
522-851, gnl|panTro1|chr21 (17449675-17450135) |
|
522-851, gnl|rheMac2|chr10 (50995947-50996410) |
