Non-Coding RNA Search

Ss1.1-Ova1-OVRM10111B11.5

Sequence:


               
               GGCGGCTGCGGCCGGAGGCGGAGGAGAGCGGTGGCGGCGGCGGCGGCGGGAGCAGCAAAG
GGGCGGCAGGGATCCTCGGGGCTGGCGGCTGGGAAGGCGTGGTAGACCCGGTGTGTGGCG
CGCCCGGAGCCCCGCGTTTCAGCCCGAGGGAAGGTAAGGCGTGCAGGAGCAGGAGACTGG
AGGGGATCCGGACCCCGCGTCTCAGCCGCTGGGGTCCCAGCGCGCTGGAAAGCCCCAGCC
GGACGCTGAGTCCGCCAAAGTGCTTGCCTGTCCCGGAGCGCTCCGGGCGCGCCAGACTTC
CCGAGAAAACTTGGCGCCAGAGTGCCTGAGCGCCCCGCGCTCCTCTGGGCACCCCGGGAA
CACGGGGCCCAGGAGGGGGTCGGCCTCCCCTTTGGGGCCGCGTCTTACTGGGCTCCGGGT
CCCCGCTCGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCTGCGGCCGGAGGCGGAGGAGAGCGGTGGCGGCGGCGGCGGCGGGAGCAGCAAAG
GGGCGGCAGGGATCCTCGGGGCTGGCGGCTGGGAAGGCGTGGTAGACCCGGTGTGTGGCG
CGCCCGGAGCCCCGCGTTTCAGCCCGAGGGAAGGTAAGGCGTGCAGGAGCAGGAGACTGG
AGGGGATCCGGACCCCGCGTCTCAGCCGCTGGGGTCCCAGCGCGCTGGAAAGCCCCAGCC
GGACGCTGAGTCCGCCAAAGTGCTTGCCTGTCCCGGAGCGCTCCGGGCGCGCCAGACTTC
CCGAGAAAACTTGGCGCCAGAGTGCCTGAGCGCCCCGCGCTCCTCTGGGCACCCCGGGAA
CACGGGGCCCAGGAGGGGGTCGGCCTCCCCTTTGGGGCCGCGTCTTACTGGGCTCCGGGT
CCCCGCTCGTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               267-421, - strand, RNAz p=0.96595

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-421, - strand, RNAz p=0.96595

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               295-397, - strand, RNAmicro p=0.99654
               

               
               282-365, + strand, RNAmicro p=0.995312

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               295-397, - strand, RNAmicro p=0.99654
               

               
               282-365, + strand, RNAmicro p=0.995312

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-432, gnl|bosTau2|chr1 (64472679-64472236)
               

               
               1-432, gnl|Hg17|chr3 (173240119-173240519)
               

               
               1-432, gnl|Mm7|chr3 (27526970-27526590)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-432, gnl|bosTau2|chr1 (64472679-64472236)
               

               
               1-432, gnl|Hg17|chr3 (173240119-173240519)
               

               
               1-432, gnl|Mm7|chr3 (27526970-27526590)

	295-397, - strand, RNAmicro p=0.99654
	282-365, + strand, RNAmicro p=0.995312

	1-432, gnl\|bosTau2\|chr1 (64472679-64472236)
	1-432, gnl\|Hg17\|chr3 (173240119-173240519)
	1-432, gnl\|Mm7\|chr3 (27526970-27526590)