Non-Coding RNA Search

Ss1.1-Ova1-OVRM10111C05.5

Sequence:


               
               GTTACCATTACTTTCAGAACCAGAGTTAGAACTGTATACTTTTAACTCTACCATTCTGCC
AGTATACTTTTAACTATAATATCCTGCCTTTCTAACTTTATTTACTAGGGAGAATTTGTG
AAGTATTAACCTCTAGGGTAGAGAGCATTGCCCCAGAGAATTTCATCTATCCCACCAGGA
GTGTGAAAAGTGCAACATTGAGACCCCTCAAACACACCTGTGTAGTTAAATGAATTTGCC
CCCAGTGATTTGGAGACATTTAGAAACCATTATGAGATGGCTGGATTGCTGCTCTCCTAG
GGTTATTTGATGTGAACCTGGAAGGAGTGACATTTATCTTTTATTTTATTTTAGTTTTTA
GGGCCGTACCCACGGCATATGAAGGTTCCCAGGCTAGGGGCCAAATCACAGCTACAGATG
CCAGCCTTCGCCACAGCAATGTCGGATCCTTAACCCATTGAGCAAGGCCAGGGATTGAAC
CCGCAACCTCATGGTTCTTAGTTGGATTTGTTTCTGCTGCACCAGATGGGAACTCTGGGA
GGGAAGTTTAGAGGTATATGTTTTACACTCAGCATAAGCATATTTGAAGTTTTTCTTTTC
TGCCATGTTAAACCAATACCTCTTAAAACTCTTTAGTGGTTCTGATAAACGGTTAATTAT
CATCAAATAGTTGTCTAAAAAAATTCTCATCAAATAGTTGTCTTATTTTGCTGAATTCCC
ATAGGAATTCTTAGCCATGTAATTCCTTTGGCAGTTGCTCACACAGTCTTACAGTATTTT
TTCTCCTGCTGTCTTGAAATGTGCGCATTTTGTGAGTGCTAACTTTCCACGGGGTTGGTG
TGTTGTGAGCAGACTGGACCATCAGCTCCTTAAGAACAGGGATGTTGTCGTTTCCCTTCC
TTCCTTCTACCTCTCTTCCCTCCTCTTTGCTTCATCTCCTTAGTACTGGCCAAGCACCTT
GTAGGCTCCCATCGTTATTACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTACCATTACTTTCAGAACCAGAGTTAGAACTGTATACTTTTAACTCTACCATTCTGCC
AGTATACTTTTAACTATAATATCCTGCCTTTCTAACTTTATTTACTAGGGAGAATTTGTG
AAGTATTAACCTCTAGGGTAGAGAGCATTGCCCCAGAGAATTTCATCTATCCCACCAGGA
GTGTGAAAAGTGCAACATTGAGACCCCTCAAACACACCTGTGTAGTTAAATGAATTTGCC
CCCAGTGATTTGGAGACATTTAGAAACCATTATGAGATGGCTGGATTGCTGCTCTCCTAG
GGTTATTTGATGTGAACCTGGAAGGAGTGACATTTATCTTTTATTTTATTTTAGTTTTTA
GGGCCGTACCCACGGCATATGAAGGTTCCCAGGCTAGGGGCCAAATCACAGCTACAGATG
CCAGCCTTCGCCACAGCAATGTCGGATCCTTAACCCATTGAGCAAGGCCAGGGATTGAAC
CCGCAACCTCATGGTTCTTAGTTGGATTTGTTTCTGCTGCACCAGATGGGAACTCTGGGA
GGGAAGTTTAGAGGTATATGTTTTACACTCAGCATAAGCATATTTGAAGTTTTTCTTTTC
TGCCATGTTAAACCAATACCTCTTAAAACTCTTTAGTGGTTCTGATAAACGGTTAATTAT
CATCAAATAGTTGTCTAAAAAAATTCTCATCAAATAGTTGTCTTATTTTGCTGAATTCCC
ATAGGAATTCTTAGCCATGTAATTCCTTTGGCAGTTGCTCACACAGTCTTACAGTATTTT
TTCTCCTGCTGTCTTGAAATGTGCGCATTTTGTGAGTGCTAACTTTCCACGGGGTTGGTG
TGTTGTGAGCAGACTGGACCATCAGCTCCTTAAGAACAGGGATGTTGTCGTTTCCCTTCC
TTCCTTCTACCTCTCTTCCCTCCTCTTTGCTTCATCTCCTTAGTACTGGCCAAGCACCTT
GTAGGCTCCCATCGTTATTACTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               140-252, - strand, RNAz p=0.528036
               

               
               640-792, - strand, RNAz p=0.999986

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               140-252, - strand, RNAz p=0.528036
               

               
               640-792, - strand, RNAz p=0.999986

Similar Transcript(s): 2 entry(ies)

More info

Similar Transcript(s): 2 entry(ies)

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               640-792, BP147869 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP147869.1|), blast E-value=0, identity=95.42% 
               

               
               640-792, DB810769 full-length enriched swine cDNA library, adult mesenteric 
(dbj|DB810769.1|), blast E-value=0, identity=95.42%

Similar Transcript(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               640-792, BP147869 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP147869.1|), blast E-value=0, identity=95.42% 
               

               
               640-792, DB810769 full-length enriched swine cDNA library, adult mesenteric 
(dbj|DB810769.1|), blast E-value=0, identity=95.42%

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               28-336, gnl|bosTau2|chr9 (39505255-39504941)
               

               
               28-336, gnl|canFam2|chr1 (72322652-72322865)
               

               
               28-336, gnl|dasNov1|scaffold_16058 (9916-9648)
               

               
               28-336, gnl|echTel1|scaffold_210947 (3066-2876)
               

               
               28-336, gnl|hg17|chr6 (131365529-131365717)
               

               
               28-336, gnl|Hg17|chr6 (131365843-131365534)
               

               
               28-336, gnl|loxAfr1|scaffold_7316 (57045-56878)
               

               
               28-336, gnl|mm7|chr10 (25158229-25158028)
               

               
               28-336, gnl|Mm7|chr10 (25157905-25158207)
               

               
               28-336, gnl|panTro1|chr5 (134020932-134021120)
               

               
               28-336, gnl|rheMac2|chr4 (132882595-132882407)
               

               
               28-336, gnl|rn3|chr1 (20462198-20462399)
               


               
               525-842, gnl|bosTau2|chr9 (39504968-39504645)
               

               
               525-842, gnl|Hg17|chr6 (131365561-131365256)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-336, gnl|bosTau2|chr9 (39505255-39504941)
               

               
               28-336, gnl|canFam2|chr1 (72322652-72322865)
               

               
               28-336, gnl|dasNov1|scaffold_16058 (9916-9648)
               

               
               28-336, gnl|echTel1|scaffold_210947 (3066-2876)
               

               
               28-336, gnl|hg17|chr6 (131365529-131365717)
               

               
               28-336, gnl|Hg17|chr6 (131365843-131365534)
               

               
               28-336, gnl|loxAfr1|scaffold_7316 (57045-56878)
               

               
               28-336, gnl|mm7|chr10 (25158229-25158028)
               

               
               28-336, gnl|Mm7|chr10 (25157905-25158207)
               

               
               28-336, gnl|panTro1|chr5 (134020932-134021120)
               

               
               28-336, gnl|rheMac2|chr4 (132882595-132882407)
               

               
               28-336, gnl|rn3|chr1 (20462198-20462399)
               


               
               525-842, gnl|bosTau2|chr9 (39504968-39504645)
               

               
               525-842, gnl|Hg17|chr6 (131365561-131365256)

	140-252, - strand, RNAz p=0.528036
	640-792, - strand, RNAz p=0.999986

	640-792, BP147869 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP147869.1\|), blast E-value=0, identity=95.42%
	640-792, DB810769 full-length enriched swine cDNA library, adult mesenteric (dbj\|DB810769.1\|), blast E-value=0, identity=95.42%

	28-336, gnl\|bosTau2\|chr9 (39505255-39504941)
	28-336, gnl\|canFam2\|chr1 (72322652-72322865)
	28-336, gnl\|dasNov1\|scaffold_16058 (9916-9648)
	28-336, gnl\|echTel1\|scaffold_210947 (3066-2876)
	28-336, gnl\|hg17\|chr6 (131365529-131365717)
	28-336, gnl\|Hg17\|chr6 (131365843-131365534)
	28-336, gnl\|loxAfr1\|scaffold_7316 (57045-56878)
	28-336, gnl\|mm7\|chr10 (25158229-25158028)
	28-336, gnl\|Mm7\|chr10 (25157905-25158207)
	28-336, gnl\|panTro1\|chr5 (134020932-134021120)
	28-336, gnl\|rheMac2\|chr4 (132882595-132882407)
	28-336, gnl\|rn3\|chr1 (20462198-20462399)

	525-842, gnl\|bosTau2\|chr9 (39504968-39504645)
	525-842, gnl\|Hg17\|chr6 (131365561-131365256)